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• W2800235764 endingPage "e00254" @default.
• W2800235764 startingPage "e00254" @default.
• W2800235764 abstract "Proteiniphilum saccharofermentans str. M3/6T is a recently described species within the family Porphyromonadaceae (phylum Bacteroidetes), which was isolated from a mesophilic laboratory-scale biogas reactor. The genome of the strain was completely sequenced and manually annotated to reconstruct its metabolic potential regarding biomass degradation and fermentation pathways. The P. saccharofermentans str. M3/6T genome consists of a 4,414,963 bp chromosome featuring an average GC-content of 43.63%. Genome analyses revealed that the strain possesses 3396 protein-coding sequences. Among them are 158 genes assigned to the carbohydrate-active-enzyme families as defined by the CAZy database, including 116 genes encoding glycosyl hydrolases (GHs) involved in pectin, arabinogalactan, hemicellulose (arabinan, xylan, mannan, β-glucans), starch, fructan and chitin degradation. The strain also features several transporter genes, some of which are located in polysaccharide utilization loci (PUL). PUL gene products are involved in glycan binding, transport and utilization at the cell surface. In the genome of strain M3/6T, 64 PUL are present and most of them in association with genes encoding carbohydrate-active enzymes. Accordingly, the strain was predicted to metabolize several sugars yielding carbon dioxide, hydrogen, acetate, formate, propionate and isovalerate as end-products of the fermentation process. Moreover, P. saccharofermentans str. M3/6T encodes extracellular and intracellular proteases and transporters predicted to be involved in protein and oligopeptide degradation. Comparative analyses between P. saccharofermentans str. M3/6T and its closest described relative P. acetatigenes str. DSM 18083T indicate that both strains share a similar metabolism regarding decomposition of complex carbohydrates and fermentation of sugars." @default.
• W2800235764 created "2018-05-17" @default.
• W2800235764 creator A5003426357 @default.
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• W2800235764 creator A5082682293 @default.
• W2800235764 creator A5085240037 @default.
• W2800235764 date "2018-06-01" @default.
• W2800235764 modified "2023-09-29" @default.
• W2800235764 title "Proteiniphilum saccharofermentans str. M3/6T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as deduced from genome-based metabolic reconstructions" @default.
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• W2800235764 doi "https://doi.org/10.1016/j.btre.2018.e00254" @default.
• W2800235764 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5993710" @default.
• W2800235764 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/29892569" @default.
• W2800235764 hasPublicationYear "2018" @default.
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