FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2802012255> ?p ?o ?g. }

• W2802012255 abstract "In general, the chloroplast genomes of angiosperms are considered to be highly conserved and affected little by adaptive evolution. In this study, we tested this hypothesis based on sequence differentiation and adaptive variation in the plastid genomes in the order Dipsacales. We sequenced the plastid genomes of one Adoxaceae species and six Caprifoliaceae species, and together with seven previously released Dipsacales chloroplasts, we determined the sequence variations, evolutionary divergence of the plastid genomes, and phylogeny of Dipsacales species. The chloroplast genomes of Adoxaceae species ranged in size from 157,074 bp (Sinadoxa corydalifolia) to 158,305 bp (Sambucus williamsii), and the plastid genomes of Caprifoliaceae varied from 154,732 bp (Lonicera fragrantissima var. lancifolia) to 156,874 bp (Weigela florida). The differences in the number of genes in Caprifoliaceae and Adoxaceae species were largely due to the expansion and contraction of inverted repeat regions. In addition, we found that the number of dispersed repeats (Adoxaceae = 37; Caprifoliaceae = 384) was much higher than that of tandem repeats (Adoxaceae = 34; Caprifoliaceae = 291) in Dipsacales species. Interestingly, we determined 19 genes with positive selection sites, including three genes encoding ATP protein subunits (atpA, atpB, and atpI), four genes for ribosome protein small subunits (rps3, rps7, rps14, and rps15), four genes for photosystem protein subunits (psaA, psaJ, psbC, and pabK), two genes for ribosome protein large subunits (rpl22 and rpl32), and the clpP, infA, matK, rbcL, ycf1, and ycf2 genes. These gene regions may have played key roles in the adaptation of Dipsacales to diverse environments. In addition, phylogenetic analysis based on the plastid genomes strongly supported the division of 14 Dipsacales species into two previously recognized sections. The diversification of Adoxaceae and Caprifoliaceae was dated to the late Cretaceous and Tertiary periods. The availability of these chloroplast genomes provides useful genetic information for studying taxonomy, phylogeny, and species evolution in Dipsacales." @default.
• W2802012255 created "2018-05-17" @default.
• W2802012255 creator A5023133980 @default.
• W2802012255 creator A5038042965 @default.
• W2802012255 creator A5052004645 @default.
• W2802012255 creator A5064430666 @default.
• W2802012255 creator A5088887720 @default.
• W2802012255 date "2018-05-23" @default.
• W2802012255 modified "2023-10-03" @default.
• W2802012255 title "Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships" @default.
• W2802012255 cites W126886948 @default.
• W2802012255 cites W1589755459 @default.
• W2802012255 cites W1964799048 @default.
• W2802012255 cites W1965521856 @default.
• W2802012255 cites W1966029203 @default.
• W2802012255 cites W1968458420 @default.
• W2802012255 cites W1970066938 @default.
• W2802012255 cites W1977547080 @default.
• W2802012255 cites W1978364392 @default.
• W2802012255 cites W1980048247 @default.
• W2802012255 cites W1980651520 @default.
• W2802012255 cites W1981513721 @default.
• W2802012255 cites W1984093962 @default.
• W2802012255 cites W1988061496 @default.
• W2802012255 cites W1988502721 @default.
• W2802012255 cites W1991330646 @default.
• W2802012255 cites W1996515220 @default.
• W2802012255 cites W1998745130 @default.
• W2802012255 cites W2000322121 @default.
• W2802012255 cites W2011579825 @default.
• W2802012255 cites W2019562429 @default.
• W2802012255 cites W2024289579 @default.
• W2802012255 cites W2027448315 @default.
• W2802012255 cites W2029195160 @default.
• W2802012255 cites W2029549914 @default.
• W2802012255 cites W2033713984 @default.
• W2802012255 cites W2038169656 @default.
• W2802012255 cites W2042124273 @default.
• W2802012255 cites W2043207852 @default.
• W2802012255 cites W2044979311 @default.
• W2802012255 cites W2045154590 @default.
• W2802012255 cites W2049991017 @default.
• W2802012255 cites W2051134292 @default.
• W2802012255 cites W2052174736 @default.
• W2802012255 cites W2072256827 @default.
• W2802012255 cites W2076573942 @default.
• W2802012255 cites W2082186061 @default.
• W2802012255 cites W2090106516 @default.
• W2802012255 cites W2097409539 @default.
• W2802012255 cites W2099388167 @default.
• W2802012255 cites W2100080865 @default.
• W2802012255 cites W2101348412 @default.
• W2802012255 cites W2101405811 @default.
• W2802012255 cites W2106768037 @default.
• W2802012255 cites W2110188639 @default.
• W2802012255 cites W2112814753 @default.
• W2802012255 cites W2114217421 @default.
• W2802012255 cites W2120113891 @default.
• W2802012255 cites W2120457919 @default.
• W2802012255 cites W2120902911 @default.
• W2802012255 cites W2124281279 @default.
• W2802012255 cites W2125270888 @default.
• W2802012255 cites W2128880918 @default.
• W2802012255 cites W2130362098 @default.
• W2802012255 cites W2135242556 @default.
• W2802012255 cites W2135581989 @default.
• W2802012255 cites W2136846721 @default.
• W2802012255 cites W2137756176 @default.
• W2802012255 cites W2138554062 @default.
• W2802012255 cites W2146058063 @default.
• W2802012255 cites W2147096538 @default.
• W2802012255 cites W2157697883 @default.
• W2802012255 cites W2162098634 @default.
• W2802012255 cites W2166558990 @default.
• W2802012255 cites W2168696662 @default.
• W2802012255 cites W2170551349 @default.
• W2802012255 cites W2170565120 @default.
• W2802012255 cites W2178042225 @default.
• W2802012255 cites W2229693528 @default.
• W2802012255 cites W2370439041 @default.
• W2802012255 cites W2465188043 @default.
• W2802012255 cites W2474362961 @default.
• W2802012255 cites W2475158195 @default.
• W2802012255 cites W2498843944 @default.
• W2802012255 cites W2524442709 @default.
• W2802012255 cites W2586647234 @default.
• W2802012255 cites W2588292917 @default.
• W2802012255 cites W2760702607 @default.
• W2802012255 doi "https://doi.org/10.3389/fpls.2018.00689" @default.
• W2802012255 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5974163" @default.
• W2802012255 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/29875791" @default.
• W2802012255 hasPublicationYear "2018" @default.
• W2802012255 type Work @default.
• W2802012255 sameAs 2802012255 @default.
• W2802012255 citedByCount "78" @default.
• W2802012255 countsByYear W28020122552018 @default.
• W2802012255 countsByYear W28020122552019 @default.
• W2802012255 countsByYear W28020122552020 @default.
• W2802012255 countsByYear W28020122552021 @default.
• W2802012255 countsByYear W28020122552022 @default.

• next