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• W2808144811 abstract "Structure-based drug design (SBDD) is commonly leveraged in rational drug design. Usually, ligand and binding site atomic coordinates from crystallographic data are exploited to optimize potency and selectivity. In addition to traditional, static views of proteins and ligands, we propose using normalized B-factors to study protein dynamics as a part of the drug optimization process. A retrospective case study of crizotinib and lorlatinib bound to both c-ros oncogene 1 kinase (ROS1) and anaplastic lymphoma kinase (ALK) L1196M related normalized B-factors to differences in binding affinity. This analysis showed that ligand binding can have protein-stabilizing effects that start near the ligand but propagate through nearby residues and structural waters to more distal motifs. The potential opportunities for analyzing normalized B-factors in SBDD are also discussed." @default.
• W2808144811 created "2018-06-21" @default.
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• W2808144811 date "2018-06-18" @default.
• W2808144811 modified "2023-09-27" @default.
• W2808144811 title "Reviving B-Factors: Retrospective Normalized B-Factor Analysis of c-ros Oncogene 1 Receptor Tyrosine Kinase and Anaplastic Lymphoma Kinase L1196M with Crizotinib and Lorlatinib" @default.
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• W2808144811 doi "https://doi.org/10.1021/acsmedchemlett.8b00147" @default.
• W2808144811 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6142050" @default.
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• W2808144811 hasPublicationYear "2018" @default.
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