FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2808479905> ?p ?o ?g. }

• W2808479905 abstract "In this paper, we report results of using enhanced sampling and blind selection techniques for high-accuracy protein structural refinement. By combining a parallel continuous simulated tempering (PCST) method, previously developed by Zang et al. [J. Chem. Phys. 141, 044113 (2014)], and the structure based model (SBM) as restraints, we refined 23 targets (18 from the refinement category of the CASP10 and 5 from that of CASP12). We also designed a novel model selection method to blindly select high-quality models from very long simulation trajectories. The combined use of PCST-SBM with the blind selection method yielded final models that are better than initial models. For Top-1 group, 7 out of 23 targets had better models (greater global distance test total scores) than the critical assessment of structure prediction participants. For Top-5 group, 10 out of 23 were better. Our results justify the crucial position of enhanced sampling in protein structure prediction and refinement and demonstrate that a considerable improvement of low-accuracy structures is achievable with current force fields." @default.
• W2808479905 created "2018-06-21" @default.
• W2808479905 creator A5000963387 @default.
• W2808479905 creator A5020060880 @default.
• W2808479905 creator A5071316360 @default.
• W2808479905 creator A5076174923 @default.
• W2808479905 date "2018-06-11" @default.
• W2808479905 modified "2023-10-14" @default.
• W2808479905 title "Improving low-accuracy protein structures using enhanced sampling techniques" @default.
• W2808479905 cites W1896473474 @default.
• W2808479905 cites W1956663338 @default.
• W2808479905 cites W1966078827 @default.
• W2808479905 cites W1970900907 @default.
• W2808479905 cites W1976499671 @default.
• W2808479905 cites W1981021420 @default.
• W2808479905 cites W1983628095 @default.
• W2808479905 cites W1989777815 @default.
• W2808479905 cites W1991329443 @default.
• W2808479905 cites W1993177346 @default.
• W2808479905 cites W2002914903 @default.
• W2808479905 cites W2003582562 @default.
• W2808479905 cites W2013145865 @default.
• W2808479905 cites W2013455940 @default.
• W2808479905 cites W2017285544 @default.
• W2808479905 cites W2018840610 @default.
• W2808479905 cites W2024035237 @default.
• W2808479905 cites W2025442958 @default.
• W2808479905 cites W2027147643 @default.
• W2808479905 cites W2028130802 @default.
• W2808479905 cites W2031584604 @default.
• W2808479905 cites W2037261084 @default.
• W2808479905 cites W2040809566 @default.
• W2808479905 cites W2044882887 @default.
• W2808479905 cites W2046601029 @default.
• W2808479905 cites W2057806291 @default.
• W2808479905 cites W2060787585 @default.
• W2808479905 cites W2065864578 @default.
• W2808479905 cites W2067236515 @default.
• W2808479905 cites W2073758233 @default.
• W2808479905 cites W2084868211 @default.
• W2808479905 cites W2088608587 @default.
• W2808479905 cites W2098312592 @default.
• W2808479905 cites W2100251789 @default.
• W2808479905 cites W2100856169 @default.
• W2808479905 cites W2104414143 @default.
• W2808479905 cites W2109801072 @default.
• W2808479905 cites W2110483430 @default.
• W2808479905 cites W2111128714 @default.
• W2808479905 cites W2114520383 @default.
• W2808479905 cites W2115213105 @default.
• W2808479905 cites W2116166262 @default.
• W2808479905 cites W2117020466 @default.
• W2808479905 cites W2117285383 @default.
• W2808479905 cites W2117451312 @default.
• W2808479905 cites W2120796076 @default.
• W2808479905 cites W2123768693 @default.
• W2808479905 cites W2124371326 @default.
• W2808479905 cites W2126812663 @default.
• W2808479905 cites W2140574901 @default.
• W2808479905 cites W2146895524 @default.
• W2808479905 cites W2149655632 @default.
• W2808479905 cites W2152811165 @default.
• W2808479905 cites W2155201844 @default.
• W2808479905 cites W2157336498 @default.
• W2808479905 cites W2161605421 @default.
• W2808479905 cites W2163915395 @default.
• W2808479905 cites W2171268876 @default.
• W2808479905 cites W2295059836 @default.
• W2808479905 cites W3098919389 @default.
• W2808479905 cites W3101472952 @default.
• W2808479905 cites W3103800097 @default.
• W2808479905 cites W3106306609 @default.
• W2808479905 doi "https://doi.org/10.1063/1.5027243" @default.
• W2808479905 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/5995690" @default.
• W2808479905 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30134714" @default.
• W2808479905 hasPublicationYear "2018" @default.
• W2808479905 type Work @default.
• W2808479905 sameAs 2808479905 @default.
• W2808479905 citedByCount "2" @default.
• W2808479905 countsByYear W28084799052018 @default.
• W2808479905 countsByYear W28084799052019 @default.
• W2808479905 crossrefType "journal-article" @default.
• W2808479905 hasAuthorship W2808479905A5000963387 @default.
• W2808479905 hasAuthorship W2808479905A5020060880 @default.
• W2808479905 hasAuthorship W2808479905A5071316360 @default.
• W2808479905 hasAuthorship W2808479905A5076174923 @default.
• W2808479905 hasBestOaLocation W28084799052 @default.
• W2808479905 hasConcept C10138342 @default.
• W2808479905 hasConcept C106131492 @default.
• W2808479905 hasConcept C11413529 @default.
• W2808479905 hasConcept C124101348 @default.
• W2808479905 hasConcept C140779682 @default.
• W2808479905 hasConcept C154945302 @default.
• W2808479905 hasConcept C162324750 @default.
• W2808479905 hasConcept C18051474 @default.
• W2808479905 hasConcept C185592680 @default.
• W2808479905 hasConcept C198082294 @default.
• W2808479905 hasConcept C31972630 @default.
• W2808479905 hasConcept C41008148 @default.
• W2808479905 hasConcept C47701112 @default.

• next