FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2885383552> ?p ?o ?g. }

• W2885383552 abstract "Taxonomic identification of plants and insects is a hard process that demands expert taxonomists and time, and it’s often difficult to distinguish on morphology only. DNA barcodes allow a rapid species discovery and identification and have been widely used for taxonomic identification by targeting known gene regions that permit to discriminate these species. DNA barcode sequence analysis is usually carried out with processes and tools that still demand a high interaction with the user or researcher. To reduce at most such interaction, we proposed PIPEBAR, a pipeline for DNA chromatograms analysis of Sanger platform sequencing, ensuring high quality consensus sequences along with efficient running time. We also proposed a paired-end reads assembly tool, OverlapPER, which is used in sequence or independently of PIPEBAR. PIPEBAR is a command line tool to automatize the processing of large number of trace files. It is accurate as the proprietary Geneious tool and faster than most popular software for barcoding analysis. It is 7 times faster than Geneious and 14 times faster than SeqTrace for processing hundreds of barcoding sequences. OverlapPER is a novel tool for overlapping paired-end reads accurately that accepts both substitution and indel errors and returns both overlapped and non-overlapped regions between a pair of reads. OverlapPER obtained the best results compared to currently used tools when merging 1,000,000 simulated paired-end reads. PIPEBAR and OverlapPER run on most operating systems and are freely available, along with supporting code and documentation, at https://sourceforge.net/projects/PIPEBAR / and https://sourceforge.net/projects/overlapper-reads /." @default.
• W2885383552 created "2018-08-22" @default.
• W2885383552 creator A5000457683 @default.
• W2885383552 creator A5048496084 @default.
• W2885383552 creator A5059183805 @default.
• W2885383552 creator A5059781509 @default.
• W2885383552 creator A5072711119 @default.
• W2885383552 date "2018-08-08" @default.
• W2885383552 modified "2023-10-16" @default.
• W2885383552 title "PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly" @default.
• W2885383552 cites W1971443418 @default.
• W2885383552 cites W1974279211 @default.
• W2885383552 cites W1996423252 @default.
• W2885383552 cites W2017214689 @default.
• W2885383552 cites W2021284638 @default.
• W2885383552 cites W2023356179 @default.
• W2885383552 cites W2039930928 @default.
• W2885383552 cites W2050474297 @default.
• W2885383552 cites W2072603644 @default.
• W2885383552 cites W2096525273 @default.
• W2885383552 cites W2097758022 @default.
• W2885383552 cites W2099901798 @default.
• W2885383552 cites W2103828958 @default.
• W2885383552 cites W2106480442 @default.
• W2885383552 cites W2118504484 @default.
• W2885383552 cites W2121180999 @default.
• W2885383552 cites W2127774996 @default.
• W2885383552 cites W2128711701 @default.
• W2885383552 cites W2132548846 @default.
• W2885383552 cites W2136068873 @default.
• W2885383552 cites W2136489776 @default.
• W2885383552 cites W2142678478 @default.
• W2885383552 cites W2146320430 @default.
• W2885383552 cites W2152644728 @default.
• W2885383552 cites W2157107905 @default.
• W2885383552 cites W2157539385 @default.
• W2885383552 cites W2167076445 @default.
• W2885383552 cites W2272917943 @default.
• W2885383552 cites W2279440129 @default.
• W2885383552 cites W2335903885 @default.
• W2885383552 cites W2383812421 @default.
• W2885383552 cites W2588886743 @default.
• W2885383552 cites W2739702018 @default.
• W2885383552 cites W2765281411 @default.
• W2885383552 cites W2806671706 @default.
• W2885383552 cites W2949908331 @default.
• W2885383552 cites W3121953277 @default.
• W2885383552 cites W4245803912 @default.
• W2885383552 doi "https://doi.org/10.1186/s12859-018-2307-y" @default.
• W2885383552 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6083499" @default.
• W2885383552 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30089465" @default.
• W2885383552 hasPublicationYear "2018" @default.
• W2885383552 type Work @default.
• W2885383552 sameAs 2885383552 @default.
• W2885383552 citedByCount "8" @default.
• W2885383552 countsByYear W28853835522020 @default.
• W2885383552 countsByYear W28853835522021 @default.
• W2885383552 countsByYear W28853835522022 @default.
• W2885383552 countsByYear W28853835522023 @default.
• W2885383552 crossrefType "journal-article" @default.
• W2885383552 hasAuthorship W2885383552A5000457683 @default.
• W2885383552 hasAuthorship W2885383552A5048496084 @default.
• W2885383552 hasAuthorship W2885383552A5059183805 @default.
• W2885383552 hasAuthorship W2885383552A5059781509 @default.
• W2885383552 hasAuthorship W2885383552A5072711119 @default.
• W2885383552 hasBestOaLocation W28853835521 @default.
• W2885383552 hasConcept C104317684 @default.
• W2885383552 hasConcept C111919701 @default.
• W2885383552 hasConcept C116834253 @default.
• W2885383552 hasConcept C119054055 @default.
• W2885383552 hasConcept C124101348 @default.
• W2885383552 hasConcept C135763542 @default.
• W2885383552 hasConcept C141732470 @default.
• W2885383552 hasConcept C153209595 @default.
• W2885383552 hasConcept C18903297 @default.
• W2885383552 hasConcept C199360897 @default.
• W2885383552 hasConcept C2776841711 @default.
• W2885383552 hasConcept C2777904410 @default.
• W2885383552 hasConcept C41008148 @default.
• W2885383552 hasConcept C43126263 @default.
• W2885383552 hasConcept C43521106 @default.
• W2885383552 hasConcept C51679486 @default.
• W2885383552 hasConcept C54355233 @default.
• W2885383552 hasConcept C552990157 @default.
• W2885383552 hasConcept C56666940 @default.
• W2885383552 hasConcept C59822182 @default.
• W2885383552 hasConcept C70721500 @default.
• W2885383552 hasConcept C76818968 @default.
• W2885383552 hasConcept C86803240 @default.
• W2885383552 hasConcept C98045186 @default.
• W2885383552 hasConceptScore W2885383552C104317684 @default.
• W2885383552 hasConceptScore W2885383552C111919701 @default.
• W2885383552 hasConceptScore W2885383552C116834253 @default.
• W2885383552 hasConceptScore W2885383552C119054055 @default.
• W2885383552 hasConceptScore W2885383552C124101348 @default.
• W2885383552 hasConceptScore W2885383552C135763542 @default.
• W2885383552 hasConceptScore W2885383552C141732470 @default.
• W2885383552 hasConceptScore W2885383552C153209595 @default.
• W2885383552 hasConceptScore W2885383552C18903297 @default.
• W2885383552 hasConceptScore W2885383552C199360897 @default.

• next