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• W2891593590 abstract "Freshwater mussel assemblages of the Upper Mississippi River sequester tons of ammonia- and urea-based biodeposits each day and aerate sediment through burrowing activities, thus creating a unique niche for nitrogen (N) cycling microorganisms. This study explored how mussels impact the abundance of N-cycling species with an emphasis on Candidatus Nitrospira inopinata, the first microorganism known to completely oxidize ammonia (comammox) to nitrate. This study used metagenomic shotgun sequencing of genomic DNA to compare nitrogen cycling species in sediment under a well-established mussel assemblage and in nearby sediment without mussels. Metagenomic reads were aligned to the prokaryotic RefSeq non-redundant protein database using BLASTx, taxonomic binning was performed using the weighted lowest common ancestor algorithm, and protein-coding genes were categorized by metabolic function using the SEED subsystem. Linear discriminant analysis (LDA) effect sizes were used to determine which metagenomes and metabolic features explained the most differences between the mussel habitat sediment and sediment without mussels. Of the N-cycling species deemed differentially abundant, Nitrospira moscoviensis and Ca. Nitrospira inopinata were responsible for creating a distinctive N-cycling microbiome in the mussel habitat sediment. Further investigation revealed that comammox Nitrospira had a large metabolic potential to degrade mussel biodeposits, as evidenced the top ten percent of protein-coding genes including the cytochrome c-type biogenesis protein required for hydroxylamine oxidation, ammonia monooxygenase, and urea decomposition SEED subsystems. Biomarker analysis of these two Nitrospira taxons suggested that N. moscoviensis was most impacted by diverse carbon metabolic processes while Ca. Nitrospira inopinata was most distinguished by multidrug efflux proteins (acrB), NiFe hydrogenase (hypF) used in hydrogen oxidation and sulfur reduction coupled reactions, and a heme chaperone (ccmE). Furthermore, our research suggests that comammox and NOB Nitrospira likely coexisted by utilizing mixotrophic metabolisms. For example, Ca. Nitrospira inopinata had the largest potentials for ammonia oxidation, nitrite reduction with nirK, and hydrogen oxidation, while NOB Nitrospira had the greatest potential for nitrite oxidation, and nitrate reduction possibly coupled with formate oxidation. Overall, our results suggest that this mussel habitat sediment harbors a niche for NOB and comammox Nitrospira, and ultimately impacts N-cycling in backwaters of the Upper Mississippi River." @default.
• W2891593590 created "2018-09-27" @default.
• W2891593590 creator A5020829332 @default.
• W2891593590 creator A5025286703 @default.
• W2891593590 date "2018-09-04" @default.
• W2891593590 modified "2023-10-04" @default.
• W2891593590 title "The Genomic Potentials of NOB and Comammox Nitrospira in River Sediment Are Impacted by Native Freshwater Mussels" @default.
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• W2891593590 cites W1502262495 @default.
• W2891593590 cites W1596955265 @default.
• W2891593590 cites W1918192518 @default.
• W2891593590 cites W1964138385 @default.
• W2891593590 cites W1973005481 @default.
• W2891593590 cites W1975432991 @default.
• W2891593590 cites W1983984469 @default.
• W2891593590 cites W1984364960 @default.
• W2891593590 cites W1985917958 @default.
• W2891593590 cites W1999433450 @default.
• W2891593590 cites W1999469328 @default.
• W2891593590 cites W2004629729 @default.
• W2891593590 cites W2009874440 @default.
• W2891593590 cites W2010563442 @default.
• W2891593590 cites W2015817090 @default.
• W2891593590 cites W2020327825 @default.
• W2891593590 cites W2025341712 @default.
• W2891593590 cites W2029267744 @default.
• W2891593590 cites W2031146914 @default.
• W2891593590 cites W2043726447 @default.
• W2891593590 cites W2045204781 @default.
• W2891593590 cites W2064406040 @default.
• W2891593590 cites W2069545845 @default.
• W2891593590 cites W2076993049 @default.
• W2891593590 cites W2085075090 @default.
• W2891593590 cites W2092444131 @default.
• W2891593590 cites W2098466396 @default.
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• W2891593590 cites W2103441770 @default.
• W2891593590 cites W2106953661 @default.
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• W2891593590 cites W2108773632 @default.
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• W2891593590 cites W2121703775 @default.
• W2891593590 cites W2133856765 @default.
• W2891593590 cites W2135003112 @default.
• W2891593590 cites W2137259955 @default.
• W2891593590 cites W2140525159 @default.
• W2891593590 cites W2141618761 @default.
• W2891593590 cites W2143197999 @default.
• W2891593590 cites W2145746574 @default.
• W2891593590 cites W2148247601 @default.
• W2891593590 cites W2155704095 @default.
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• W2891593590 cites W2172262848 @default.
• W2891593590 cites W2173732482 @default.
• W2891593590 cites W2175951962 @default.
• W2891593590 cites W2179653678 @default.
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• W2891593590 cites W2438857219 @default.
• W2891593590 cites W2465681871 @default.
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• W2891593590 doi "https://doi.org/10.3389/fmicb.2018.02061" @default.
• W2891593590 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6131200" @default.
• W2891593590 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30233538" @default.
• W2891593590 hasPublicationYear "2018" @default.
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