Matches in SemOpenAlex for { <https://semopenalex.org/work/W2891844174> ?p ?o ?g. }
- W2891844174 abstract "Association analysis was performed at the whole genome level to identify loci affecting the caffeine and trigonelline content of Coffea arabica beans. DNA extracted from extreme phenotypes was bulked (high and low caffeine, and high and low trigonelline) based on biochemical analysis of the germplasm collection. Sequencing and mapping using the combined reference genomes of C. canephora and C. eugenioides (CC and CE) identified 1351 non-synonymous SNPs that distinguished the low- and high-caffeine bulks. Gene annotation analysis with Blast2GO revealed that these SNPs corresponding to 908 genes with 56 unique KEGG pathways and 49 unique enzymes. Based on KEGG pathway-based analysis, 40 caffeine-associated SNPs were discovered, among which nine SNPs were tightly associated with genes encoding enzymes involved in the conversion of substrates (i.e. SAM, xanthine and IMP) which participate in the caffeine biosynthesic pathways. Likewise, 1060 non-synonymous SNPs were found to distinguish the low- and high-trigonelline bulks. They were associated with 719 genes involved in 61 unique KEGG pathways and 51 unique enzymes. The KEGG pathway-based analysis revealed 24 trigonelline-associated SNPs tightly linked to genes encoding enzymes involved in the conversion of substrates (i.e. SAM, L-tryptophan) which participate in the trigonelline biosynthesis pathways. These SNPs could be useful targets for further functional validation and subsequent application in arabica quality breeding." @default.
- W2891844174 created "2018-09-27" @default.
- W2891844174 creator A5013595883 @default.
- W2891844174 creator A5026653573 @default.
- W2891844174 creator A5030422302 @default.
- W2891844174 creator A5057073317 @default.
- W2891844174 creator A5062384959 @default.
- W2891844174 creator A5080663823 @default.
- W2891844174 date "2018-09-05" @default.
- W2891844174 modified "2023-09-24" @default.
- W2891844174 title "SNP in the Coffea arabica genome associated with coffee quality" @default.
- W2891844174 cites W1491037186 @default.
- W2891844174 cites W1503278476 @default.
- W2891844174 cites W1538192694 @default.
- W2891844174 cites W1579111454 @default.
- W2891844174 cites W158924362 @default.
- W2891844174 cites W1785346387 @default.
- W2891844174 cites W1845028561 @default.
- W2891844174 cites W1860371261 @default.
- W2891844174 cites W1883752748 @default.
- W2891844174 cites W1969515098 @default.
- W2891844174 cites W1969760553 @default.
- W2891844174 cites W1970543529 @default.
- W2891844174 cites W1973652210 @default.
- W2891844174 cites W1973976160 @default.
- W2891844174 cites W1974414763 @default.
- W2891844174 cites W1981396672 @default.
- W2891844174 cites W1981863568 @default.
- W2891844174 cites W1983460654 @default.
- W2891844174 cites W1986173882 @default.
- W2891844174 cites W1986473212 @default.
- W2891844174 cites W1993491394 @default.
- W2891844174 cites W1994769938 @default.
- W2891844174 cites W1995641409 @default.
- W2891844174 cites W1996996022 @default.
- W2891844174 cites W1999102617 @default.
- W2891844174 cites W1999278225 @default.
- W2891844174 cites W2002632259 @default.
- W2891844174 cites W2009221456 @default.
- W2891844174 cites W2013091564 @default.
- W2891844174 cites W2025015388 @default.
- W2891844174 cites W2030561228 @default.
- W2891844174 cites W2032143276 @default.
- W2891844174 cites W2037908119 @default.
- W2891844174 cites W2038120864 @default.
- W2891844174 cites W2058915771 @default.
- W2891844174 cites W2069692307 @default.
- W2891844174 cites W2081987414 @default.
- W2891844174 cites W2082822315 @default.
- W2891844174 cites W2082897537 @default.
- W2891844174 cites W2086640992 @default.
- W2891844174 cites W2088701641 @default.
- W2891844174 cites W2088917080 @default.
- W2891844174 cites W2090079179 @default.
- W2891844174 cites W2094866176 @default.
- W2891844174 cites W2101258598 @default.
- W2891844174 cites W2104833513 @default.
- W2891844174 cites W2105183598 @default.
- W2891844174 cites W2110745948 @default.
- W2891844174 cites W2113280067 @default.
- W2891844174 cites W2119333469 @default.
- W2891844174 cites W2120483845 @default.
- W2891844174 cites W2126012436 @default.
- W2891844174 cites W2128769663 @default.
- W2891844174 cites W2130409038 @default.
- W2891844174 cites W2131088968 @default.
- W2891844174 cites W2142506733 @default.
- W2891844174 cites W2145083705 @default.
- W2891844174 cites W2146156366 @default.
- W2891844174 cites W2157575823 @default.
- W2891844174 cites W2157752701 @default.
- W2891844174 cites W2159946869 @default.
- W2891844174 cites W2164154943 @default.
- W2891844174 cites W2171676623 @default.
- W2891844174 cites W2227858797 @default.
- W2891844174 cites W2290467175 @default.
- W2891844174 cites W2300074473 @default.
- W2891844174 cites W2336381534 @default.
- W2891844174 cites W2417677784 @default.
- W2891844174 cites W2464082129 @default.
- W2891844174 cites W2605796596 @default.
- W2891844174 cites W2793662037 @default.
- W2891844174 cites W2923211277 @default.
- W2891844174 doi "https://doi.org/10.1007/s11295-018-1282-9" @default.
- W2891844174 hasPublicationYear "2018" @default.
- W2891844174 type Work @default.
- W2891844174 sameAs 2891844174 @default.
- W2891844174 citedByCount "19" @default.
- W2891844174 countsByYear W28918441742020 @default.
- W2891844174 countsByYear W28918441742021 @default.
- W2891844174 countsByYear W28918441742022 @default.
- W2891844174 countsByYear W28918441742023 @default.
- W2891844174 crossrefType "journal-article" @default.
- W2891844174 hasAuthorship W2891844174A5013595883 @default.
- W2891844174 hasAuthorship W2891844174A5026653573 @default.
- W2891844174 hasAuthorship W2891844174A5030422302 @default.
- W2891844174 hasAuthorship W2891844174A5057073317 @default.
- W2891844174 hasAuthorship W2891844174A5062384959 @default.
- W2891844174 hasAuthorship W2891844174A5080663823 @default.
- W2891844174 hasBestOaLocation W28918441741 @default.