FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2892229044> ?p ?o ?g. }

• W2892229044 endingPage "44" @default.
• W2892229044 startingPage "36" @default.
• W2892229044 abstract "Mammalian glycosaminoglycans are linear complex polysaccharides comprising heparan sulfate, heparin, dermatan sulfate, chondroitin sulfate, keratan sulfate and hyaluronic acid. They bind to numerous proteins and these interactions mediate their biological activities. GAG-protein interaction data reported in the literature are curated mostly in MatrixDB database (http://matrixdb.univ-lyon1.fr/). However, a standard nomenclature and a machine-readable format of GAGs together with bioinformatics tools for mining these interaction data are lacking. We report here the building of an automated pipeline to (i) standardize the format of GAG sequences interacting with proteins manually curated from the literature, (ii) translate them into the machine-readable GlycoCT format and into SNFG (Symbol Nomenclature For Glycan) images and (iii) convert their sequences into a format processed by a builder generating three-dimensional structures of polysaccharides based on a repertoire of conformations experimentally validated by data extracted from crystallized GAG-protein complexes. We have developed for this purpose a converter (the CT23D converter) to automatically translate the GlycoCT code of a GAG sequence into the input file required to construct a three-dimensional model." @default.
• W2892229044 created "2018-09-27" @default.
• W2892229044 creator A5011122474 @default.
• W2892229044 creator A5037107254 @default.
• W2892229044 creator A5037146137 @default.
• W2892229044 creator A5054799443 @default.
• W2892229044 creator A5055191235 @default.
• W2892229044 creator A5061905671 @default.
• W2892229044 date "2018-09-18" @default.
• W2892229044 modified "2023-09-30" @default.
• W2892229044 title "A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space" @default.
• W2892229044 cites W1553810884 @default.
• W2892229044 cites W1594150232 @default.
• W2892229044 cites W1935434993 @default.
• W2892229044 cites W1947804912 @default.
• W2892229044 cites W1975147762 @default.
• W2892229044 cites W1983217234 @default.
• W2892229044 cites W1986012385 @default.
• W2892229044 cites W1995683190 @default.
• W2892229044 cites W2002659444 @default.
• W2892229044 cites W2014865312 @default.
• W2892229044 cites W2015986985 @default.
• W2892229044 cites W2017199793 @default.
• W2892229044 cites W2021626180 @default.
• W2892229044 cites W2051707493 @default.
• W2892229044 cites W2051810242 @default.
• W2892229044 cites W2058229406 @default.
• W2892229044 cites W2085463309 @default.
• W2892229044 cites W2097977053 @default.
• W2892229044 cites W2098383595 @default.
• W2892229044 cites W2102268440 @default.
• W2892229044 cites W2124450302 @default.
• W2892229044 cites W2143655767 @default.
• W2892229044 cites W2151280162 @default.
• W2892229044 cites W2152821878 @default.
• W2892229044 cites W2165160175 @default.
• W2892229044 cites W2169918166 @default.
• W2892229044 cites W2177965982 @default.
• W2892229044 cites W2190199302 @default.
• W2892229044 cites W2221682991 @default.
• W2892229044 cites W2336022154 @default.
• W2892229044 cites W2401162373 @default.
• W2892229044 cites W2559158649 @default.
• W2892229044 cites W2591586569 @default.
• W2892229044 cites W2743571801 @default.
• W2892229044 cites W2771627141 @default.
• W2892229044 cites W2772791582 @default.
• W2892229044 doi "https://doi.org/10.1093/glycob/cwy084" @default.
• W2892229044 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30239692" @default.
• W2892229044 hasPublicationYear "2018" @default.
• W2892229044 type Work @default.
• W2892229044 sameAs 2892229044 @default.
• W2892229044 citedByCount "28" @default.
• W2892229044 countsByYear W28922290442018 @default.
• W2892229044 countsByYear W28922290442019 @default.
• W2892229044 countsByYear W28922290442020 @default.
• W2892229044 countsByYear W28922290442021 @default.
• W2892229044 countsByYear W28922290442022 @default.
• W2892229044 countsByYear W28922290442023 @default.
• W2892229044 crossrefType "journal-article" @default.
• W2892229044 hasAuthorship W2892229044A5011122474 @default.
• W2892229044 hasAuthorship W2892229044A5037107254 @default.
• W2892229044 hasAuthorship W2892229044A5037146137 @default.
• W2892229044 hasAuthorship W2892229044A5054799443 @default.
• W2892229044 hasAuthorship W2892229044A5055191235 @default.
• W2892229044 hasAuthorship W2892229044A5061905671 @default.
• W2892229044 hasBestOaLocation W28922290441 @default.
• W2892229044 hasConcept C108625454 @default.
• W2892229044 hasConcept C153074725 @default.
• W2892229044 hasConcept C185592680 @default.
• W2892229044 hasConcept C199360897 @default.
• W2892229044 hasConcept C206212055 @default.
• W2892229044 hasConcept C2776735749 @default.
• W2892229044 hasConcept C2778041096 @default.
• W2892229044 hasConcept C2778066728 @default.
• W2892229044 hasConcept C2778230131 @default.
• W2892229044 hasConcept C2779553658 @default.
• W2892229044 hasConcept C41008148 @default.
• W2892229044 hasConcept C55493867 @default.
• W2892229044 hasConcept C70721500 @default.
• W2892229044 hasConcept C77088390 @default.
• W2892229044 hasConcept C86803240 @default.
• W2892229044 hasConceptScore W2892229044C108625454 @default.
• W2892229044 hasConceptScore W2892229044C153074725 @default.
• W2892229044 hasConceptScore W2892229044C185592680 @default.
• W2892229044 hasConceptScore W2892229044C199360897 @default.
• W2892229044 hasConceptScore W2892229044C206212055 @default.
• W2892229044 hasConceptScore W2892229044C2776735749 @default.
• W2892229044 hasConceptScore W2892229044C2778041096 @default.
• W2892229044 hasConceptScore W2892229044C2778066728 @default.
• W2892229044 hasConceptScore W2892229044C2778230131 @default.
• W2892229044 hasConceptScore W2892229044C2779553658 @default.
• W2892229044 hasConceptScore W2892229044C41008148 @default.
• W2892229044 hasConceptScore W2892229044C55493867 @default.
• W2892229044 hasConceptScore W2892229044C70721500 @default.
• W2892229044 hasConceptScore W2892229044C77088390 @default.
• W2892229044 hasConceptScore W2892229044C86803240 @default.
• W2892229044 hasFunder F4320321589 @default.

• next