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• W2893512833 endingPage "e5681" @default.
• W2893512833 startingPage "e5681" @default.
• W2893512833 abstract "Soil salinity is one of the major environmental stresses affecting plant growth, development, and reproduction. Salt stress also affects the accumulation of some secondary metabolites in plants. Glehnia littoralis is an endangered medicinal halophyte that grows in coastal habitats. Peeled and dried Glehnia littoralis roots, named Radix Glehniae, have been used traditionally as a Chinese herbal medicine. Although Glehnia littoralis has great ecological and commercial value, salt-related mechanisms in Glehnia littoralis remain largely unknown. In this study, we analysed the transcriptome of Glehnia littoralis in response to salt stress by RNA-sequencing to identify potential salt tolerance gene networks. After de novo assembly, we obtained 105,875 unigenes, of which 75,559 were annotated in public databases. We identified 10,335 differentially expressed genes (DEGs; false discovery rate <0.05 and |log2 fold-change| ≥ 1) between NaCl treatment (GL2) and control (GL1), with 5,018 upregulated and 5,317 downregulated DEGs. To further this investigation, we performed Gene Ontology (GO) analysis and the Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis. DEGs involved in secondary metabolite biosynthetic pathways, plant signal transduction pathways, and transcription factors in response to salt stress were analysed. In addition, we tested the gene expression of 15 unigenes by quantitative real-time PCR (qRT-PCR) to confirm the RNA-sequencing results. Our findings represent a large-scale assessment of the Glehnia littoralis gene resource, and provide useful information for exploring its molecular mechanisms of salt tolerance. Moreover, genes enriched in metabolic pathways could be used to investigate potential biosynthetic pathways of active compounds by Glehnia littoralis." @default.
• W2893512833 created "2018-10-05" @default.
• W2893512833 creator A5006506850 @default.
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• W2893512833 creator A5065387843 @default.
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• W2893512833 creator A5078495471 @default.
• W2893512833 date "2018-09-26" @default.
• W2893512833 modified "2023-09-24" @default.
• W2893512833 title "<i>De novo</i> transcriptome sequencing and analysis of genes related to salt stress response in <i>Glehnia littoralis</i>" @default.
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• W2893512833 doi "https://doi.org/10.7717/peerj.5681" @default.
• W2893512833 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6170154" @default.
• W2893512833 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30294511" @default.
• W2893512833 hasPublicationYear "2018" @default.
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