FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2895034650> ?p ?o ?g. }

• W2895034650 abstract "ABSTRACT Alignment-free classification of sequences against collections of sequences has enabled high-throughput processing of sequencing data in many bioinformatics analysis pipelines. Originally hash-table based, much work has been done to improve and reduce the memory requirement of indexing of k -mer sequences with probabilistic indexing strategies. These efforts have led to lower memory highly efficient indexes, but often lack sensitivity in the face of sequencing errors or polymorphism because they are k -mer based. To address this, we designed a new memory efficient data structure that can tolerate mismatches using multiple spaced seeds, called a multi-index Bloom Filter. Implemented as part of BioBloom Tools, we demonstrate our algorithm in two applications, read binning for targeted assembly and taxonomic read assignment. Our tool shows a higher sensitivity and specificity for read-binning than BWA MEM at an order of magnitude less time. For taxonomic classification, we show higher sensitivity than CLARK-S at an order of magnitude less time while using half the memory." @default.
• W2895034650 created "2018-10-12" @default.
• W2895034650 creator A5017539699 @default.
• W2895034650 creator A5023440487 @default.
• W2895034650 creator A5037360052 @default.
• W2895034650 creator A5038133198 @default.
• W2895034650 creator A5039594608 @default.
• W2895034650 creator A5064605024 @default.
• W2895034650 creator A5066350622 @default.
• W2895034650 date "2018-10-05" @default.
• W2895034650 modified "2023-10-18" @default.
• W2895034650 title "Improving on hash-based probabilistic sequence classification using multiple spaced seeds and multi-index Bloom filters" @default.
• W2895034650 cites W1955121107 @default.
• W2895034650 cites W1988581590 @default.
• W2895034650 cites W1989774703 @default.
• W2895034650 cites W2003347102 @default.
• W2895034650 cites W2012150214 @default.
• W2895034650 cites W2103962160 @default.
• W2895034650 cites W2106532429 @default.
• W2895034650 cites W2109616780 @default.
• W2895034650 cites W2114013334 @default.
• W2895034650 cites W2116412478 @default.
• W2895034650 cites W2119885577 @default.
• W2895034650 cites W2123845384 @default.
• W2895034650 cites W2128591967 @default.
• W2895034650 cites W2148425737 @default.
• W2895034650 cites W2156658871 @default.
• W2895034650 cites W2159954944 @default.
• W2895034650 cites W2165145683 @default.
• W2895034650 cites W2173732482 @default.
• W2895034650 cites W2463091895 @default.
• W2895034650 cites W2507592292 @default.
• W2895034650 cites W2558715006 @default.
• W2895034650 cites W2570372911 @default.
• W2895034650 cites W2592760774 @default.
• W2895034650 cites W2729314544 @default.
• W2895034650 cites W2949351818 @default.
• W2895034650 cites W2950380733 @default.
• W2895034650 cites W2951176108 @default.
• W2895034650 cites W2951306587 @default.
• W2895034650 cites W3098719287 @default.
• W2895034650 cites W3123160398 @default.
• W2895034650 cites W3123195831 @default.
• W2895034650 cites W4248855359 @default.
• W2895034650 doi "https://doi.org/10.1101/434795" @default.
• W2895034650 hasPublicationYear "2018" @default.
• W2895034650 type Work @default.
• W2895034650 sameAs 2895034650 @default.
• W2895034650 citedByCount "2" @default.
• W2895034650 countsByYear W28950346502019 @default.
• W2895034650 countsByYear W28950346502020 @default.
• W2895034650 crossrefType "posted-content" @default.
• W2895034650 hasAuthorship W2895034650A5017539699 @default.
• W2895034650 hasAuthorship W2895034650A5023440487 @default.
• W2895034650 hasAuthorship W2895034650A5037360052 @default.
• W2895034650 hasAuthorship W2895034650A5038133198 @default.
• W2895034650 hasAuthorship W2895034650A5039594608 @default.
• W2895034650 hasAuthorship W2895034650A5064605024 @default.
• W2895034650 hasAuthorship W2895034650A5066350622 @default.
• W2895034650 hasBestOaLocation W28950346501 @default.
• W2895034650 hasConcept C11413529 @default.
• W2895034650 hasConcept C124101348 @default.
• W2895034650 hasConcept C127413603 @default.
• W2895034650 hasConcept C147224247 @default.
• W2895034650 hasConcept C154945302 @default.
• W2895034650 hasConcept C162319229 @default.
• W2895034650 hasConcept C199360897 @default.
• W2895034650 hasConcept C21200559 @default.
• W2895034650 hasConcept C24326235 @default.
• W2895034650 hasConcept C38652104 @default.
• W2895034650 hasConcept C41008148 @default.
• W2895034650 hasConcept C49937458 @default.
• W2895034650 hasConcept C67388219 @default.
• W2895034650 hasConcept C75165309 @default.
• W2895034650 hasConcept C99138194 @default.
• W2895034650 hasConceptScore W2895034650C11413529 @default.
• W2895034650 hasConceptScore W2895034650C124101348 @default.
• W2895034650 hasConceptScore W2895034650C127413603 @default.
• W2895034650 hasConceptScore W2895034650C147224247 @default.
• W2895034650 hasConceptScore W2895034650C154945302 @default.
• W2895034650 hasConceptScore W2895034650C162319229 @default.
• W2895034650 hasConceptScore W2895034650C199360897 @default.
• W2895034650 hasConceptScore W2895034650C21200559 @default.
• W2895034650 hasConceptScore W2895034650C24326235 @default.
• W2895034650 hasConceptScore W2895034650C38652104 @default.
• W2895034650 hasConceptScore W2895034650C41008148 @default.
• W2895034650 hasConceptScore W2895034650C49937458 @default.
• W2895034650 hasConceptScore W2895034650C67388219 @default.
• W2895034650 hasConceptScore W2895034650C75165309 @default.
• W2895034650 hasConceptScore W2895034650C99138194 @default.
• W2895034650 hasLocation W28950346501 @default.
• W2895034650 hasOpenAccess W2895034650 @default.
• W2895034650 hasPrimaryLocation W28950346501 @default.
• W2895034650 hasRelatedWork W1133813156 @default.
• W2895034650 hasRelatedWork W1564712904 @default.
• W2895034650 hasRelatedWork W1606491530 @default.
• W2895034650 hasRelatedWork W2011343125 @default.
• W2895034650 hasRelatedWork W2129541134 @default.
• W2895034650 hasRelatedWork W2156338408 @default.
• W2895034650 hasRelatedWork W2178463917 @default.

• next