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- W2896427342 endingPage "195" @default.
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- W2896427342 abstract "Computational analyses play crucial roles in characterizing splicing isoforms in plant genomes. In this review, we provide a survey of computational tools used in recently published, genome-scale splicing analyses in plants. We summarize the commonly used software and pipelines for read mapping, isoform reconstruction, isoform quantification, and differential expression analysis. We also discuss methods for analyzing long reads and the strategies to combine long and short reads in identifying splicing isoforms. We review several tools for characterizing local splicing events, splicing graphs, coding potential, and visualizing splicing isoforms. We further discuss the procedures for identifying conserved splicing isoforms across plant species. Finally, we discuss the outlook of integrating other genomic data with splicing analyses to identify regulatory mechanisms of AS on genome-wide scale." @default.
- W2896427342 created "2018-10-26" @default.
- W2896427342 creator A5020333008 @default.
- W2896427342 creator A5033718341 @default.
- W2896427342 creator A5051328215 @default.
- W2896427342 creator A5090754175 @default.
- W2896427342 date "2019-02-01" @default.
- W2896427342 modified "2023-09-29" @default.
- W2896427342 title "Computational analysis of alternative splicing in plant genomes" @default.
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