FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2898087623> ?p ?o ?g. }

• W2898087623 abstract "Species misclassification (misidentification) and handling errors have been frequently reported in various plant species conserved at diverse gene banks, which could restrict use of germplasm for correct purpose. The objectives of the present study were to (i) determine the extent of genotyping error (reproducibility) on DArTseq-based single-nucleotide polymorphisms (SNPs); (ii) determine the proportion of misclassified accessions across 3134 samples representing three African rice species complex (Oryza glaberrima, O. barthii, and O. longistaminata) and an Asian rice (O. sativa), which are conserved at the AfricaRice gene bank; and (iii) develop species- and sub-species (ecotype)-specific diagnostic SNP markers for rapid and low-cost quality control (QC) analysis. Genotyping error estimated from 15 accessions, each replicated from 2 to 16 times, varied from 0.2 to 3.1%, with an overall average of 0.8%. Using a total of 3134 accessions genotyped with 31,739 SNPs, the proportion of misclassified samples was 3.1% (97 of the 3134 accessions). Excluding the 97 misclassified accessions, we identified a total of 332 diagnostic SNPs that clearly discriminated the three indigenous African species complex from Asian rice (156 SNPs), O. longistaminata accessions from both O. barthii and O. glaberrima (131 SNPs), and O. sativa spp. indica from O. sativa spp. japonica (45 SNPs). Using chromosomal position, minor allele frequency, and polymorphic information content as selection criteria, we recommended a subset of 24 to 36 of the 332 diagnostic SNPs for routine QC genotyping, which would be highly useful in determining the genetic identity of each species and correct human errors during routine gene bank operations." @default.
• W2898087623 created "2018-11-02" @default.
• W2898087623 creator A5017478216 @default.
• W2898087623 creator A5025337002 @default.
• W2898087623 creator A5034553320 @default.
• W2898087623 creator A5039554320 @default.
• W2898087623 creator A5040764430 @default.
• W2898087623 creator A5064972907 @default.
• W2898087623 creator A5074233031 @default.
• W2898087623 creator A5083035159 @default.
• W2898087623 creator A5086426839 @default.
• W2898087623 creator A5088430214 @default.
• W2898087623 date "2018-10-24" @default.
• W2898087623 modified "2023-10-16" @default.
• W2898087623 title "Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species" @default.
• W2898087623 cites W16599179 @default.
• W2898087623 cites W1964786912 @default.
• W2898087623 cites W1970034764 @default.
• W2898087623 cites W1974554983 @default.
• W2898087623 cites W1976146752 @default.
• W2898087623 cites W1984474552 @default.
• W2898087623 cites W1989374817 @default.
• W2898087623 cites W1993096431 @default.
• W2898087623 cites W1999917419 @default.
• W2898087623 cites W2017808390 @default.
• W2898087623 cites W2028749099 @default.
• W2898087623 cites W2055604773 @default.
• W2898087623 cites W2063517144 @default.
• W2898087623 cites W2063905531 @default.
• W2898087623 cites W2080243459 @default.
• W2898087623 cites W2099162995 @default.
• W2898087623 cites W2103156019 @default.
• W2898087623 cites W2110035718 @default.
• W2898087623 cites W2119076547 @default.
• W2898087623 cites W2128830543 @default.
• W2898087623 cites W2132926391 @default.
• W2898087623 cites W2145810173 @default.
• W2898087623 cites W2157296800 @default.
• W2898087623 cites W2159474015 @default.
• W2898087623 cites W2184992532 @default.
• W2898087623 cites W2311203695 @default.
• W2898087623 cites W2333456985 @default.
• W2898087623 cites W2409167922 @default.
• W2898087623 cites W2577110407 @default.
• W2898087623 cites W2737039037 @default.
• W2898087623 cites W2747213752 @default.
• W2898087623 cites W2757956874 @default.
• W2898087623 cites W2797450127 @default.
• W2898087623 cites W2834653239 @default.
• W2898087623 cites W293318132 @default.
• W2898087623 doi "https://doi.org/10.1007/s11032-018-0885-z" @default.
• W2898087623 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6208651" @default.
• W2898087623 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30416368" @default.
• W2898087623 hasPublicationYear "2018" @default.
• W2898087623 type Work @default.
• W2898087623 sameAs 2898087623 @default.
• W2898087623 citedByCount "21" @default.
• W2898087623 countsByYear W28980876232018 @default.
• W2898087623 countsByYear W28980876232019 @default.
• W2898087623 countsByYear W28980876232020 @default.
• W2898087623 countsByYear W28980876232021 @default.
• W2898087623 countsByYear W28980876232022 @default.
• W2898087623 countsByYear W28980876232023 @default.
• W2898087623 crossrefType "journal-article" @default.
• W2898087623 hasAuthorship W2898087623A5017478216 @default.
• W2898087623 hasAuthorship W2898087623A5025337002 @default.
• W2898087623 hasAuthorship W2898087623A5034553320 @default.
• W2898087623 hasAuthorship W2898087623A5039554320 @default.
• W2898087623 hasAuthorship W2898087623A5040764430 @default.
• W2898087623 hasAuthorship W2898087623A5064972907 @default.
• W2898087623 hasAuthorship W2898087623A5074233031 @default.
• W2898087623 hasAuthorship W2898087623A5083035159 @default.
• W2898087623 hasAuthorship W2898087623A5086426839 @default.
• W2898087623 hasAuthorship W2898087623A5088430214 @default.
• W2898087623 hasBestOaLocation W28980876231 @default.
• W2898087623 hasConcept C104317684 @default.
• W2898087623 hasConcept C10860467 @default.
• W2898087623 hasConcept C135763542 @default.
• W2898087623 hasConcept C139275648 @default.
• W2898087623 hasConcept C153209595 @default.
• W2898087623 hasConcept C163691529 @default.
• W2898087623 hasConcept C190789776 @default.
• W2898087623 hasConcept C2777461220 @default.
• W2898087623 hasConcept C2778543611 @default.
• W2898087623 hasConcept C31467283 @default.
• W2898087623 hasConcept C54355233 @default.
• W2898087623 hasConcept C59822182 @default.
• W2898087623 hasConcept C81941488 @default.
• W2898087623 hasConcept C86803240 @default.
• W2898087623 hasConceptScore W2898087623C104317684 @default.
• W2898087623 hasConceptScore W2898087623C10860467 @default.
• W2898087623 hasConceptScore W2898087623C135763542 @default.
• W2898087623 hasConceptScore W2898087623C139275648 @default.
• W2898087623 hasConceptScore W2898087623C153209595 @default.
• W2898087623 hasConceptScore W2898087623C163691529 @default.
• W2898087623 hasConceptScore W2898087623C190789776 @default.
• W2898087623 hasConceptScore W2898087623C2777461220 @default.
• W2898087623 hasConceptScore W2898087623C2778543611 @default.
• W2898087623 hasConceptScore W2898087623C31467283 @default.
• W2898087623 hasConceptScore W2898087623C54355233 @default.

• next