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• W2898824114 abstract "Abstract Microbial redox-transformation of arsenic (As) species plays an important role in As-mobilization processes in groundwater of South-East Asian countries, affecting health of millions of people. However, the complete genetic mechanism is still unclear, thus, necessitating the genomic study on As eco-physiology and niche colonization mechanisms to understand the As biogeochemical cycling processes. The present study describes the first genome report on whole genomic attributes of an As-transforming Escherichia coli Cont-1 from As-contaminated groundwater and its eco-physiological provenance. The genome (∼4.9 Mb) of the strain Cont-1 codes for 4982 genes, 103 RNAs, 3652 cluster of orthologous groups (COGs), 1544 enzymes, 459 signal peptides, 1124 trans-membrane proteins, and 78 horizontally transferred genes, with 48.2 G + C mol % content. Taxono-genomic analysis [16S rRNA gene homology, average nucleotide identity (ANI), and DNA-DNA hybridization (DDH)] of strain Cont-1 revealed its highest identity to E. coli K-12 members, confirming its species affiliation to E. coli. The genes for As detoxification (As5+-reduction and -transformation by Ars operon), anaerobic respiration [Fe3+, NO3−, S2O32−, trimethyl-amine oxide (TMAO), dimethyl sulfoxide (DMSO), formate, and fumarate], metal-transportation and -resistance (Fe, Zn, Cu) have been detected. The strain harbours complete operon for glycolysis, fermentative pathways, N- and S- assimilation, and transcriptional regulations, confirmed its eco-physiological versatility and validated the physiological observations. The presence of genes for As/Fe metabolism, signal transduction, transcriptional regulations, mobile elements, and hypothetical proteins within genomic island indicates potential horizontal gene transfer events in its genome, suggesting the niche adaptation and competitive survival strategies of strain Cont-1 in the As-contaminated groundwater." @default.
• W2898824114 created "2018-11-09" @default.
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• W2898824114 date "2018-12-01" @default.
• W2898824114 modified "2023-09-23" @default.
• W2898824114 title "Genome sequencing and functional analysis of an environmental isolate Escherichia coli Cont-1 revealed its genetic basis of arsenic-transformation and niche adaptation" @default.
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• W2898824114 doi "https://doi.org/10.1016/j.egg.2018.11.001" @default.
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