FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2899922091> ?p ?o ?g. }

• W2899922091 abstract "Long non-coding RNAs (lncRNAs) are involved in variable cleavage, transcriptional interference, regulation of DNA methylation and protein modification. However, the regulation of lncRNAs in plant somatic embryos remains unclear. The longan (Dimocarpus longan) somatic embryogenesis (SE) system is a good system for research on longan embryo development. In this study, 7643 lncRNAs obtained during early SE in D. longan were identified by high-throughput sequencing, among which 6005 lncRNAs were expressed. Of the expressed lncRNAs, 4790 were found in all samples and 160 were specifically expressed in embryogenic callus (EC), 154 in incomplete embryogenic compact structures (ICpECs), and 376 in globular embryos (GEs). We annotated the 6005 expressed lncRNAs, and 1404 lncRNAs belonged to 506 noncoding RNA (ncRNA) families and 4682 lncRNAs were predicted to target protein-coding genes. The target genes included 5051 cis-regulated target genes (5712 pairs) and 1605 trans-regulated target genes (3618 pairs). KEGG analysis revealed that most of the differentially expressed target genes (mRNAs) of the lncRNAs were enriched in the “plant-pathogen interaction” and “plant hormone signaling” pathways during early longan SE. Real-time quantitative PCR confirmed that 20 selected lncRNAs showed significant differences in expression and that five lncRNAs were related to auxin response factors. Compared with the FPKM expression trends, 16 lncRNA expression trends were the same in qPCR. In lncRNA-miRNA-mRNA relationship prediction, 40 lncRNAs were predicted to function as eTMs for 15 miRNAs and 7 lncRNAs were identified as potential miRNA precursors. In addition, we verified the lncRNA-miRNA-mRNA regulatory relationships by transient expression of miRNAs (miR172a, miR159a.1 and miR398a). Analyses of lncRNAs during early longan SE showed that differentially expressed lncRNAs were involved in expression regulation at each SE stage, and may form a regulatory network with miRNAs and mRNAs. These findings provide new insights into lncRNAs and lay a foundation for future functional analysis of lncRNAs during early longan SE." @default.
• W2899922091 created "2018-11-16" @default.
• W2899922091 creator A5000164895 @default.
• W2899922091 creator A5006412117 @default.
• W2899922091 creator A5017561384 @default.
• W2899922091 creator A5040256399 @default.
• W2899922091 creator A5043362048 @default.
• W2899922091 creator A5053815236 @default.
• W2899922091 creator A5069348614 @default.
• W2899922091 creator A5072879508 @default.
• W2899922091 creator A5078290472 @default.
• W2899922091 creator A5084381771 @default.
• W2899922091 creator A5086556189 @default.
• W2899922091 date "2018-11-06" @default.
• W2899922091 modified "2023-10-17" @default.
• W2899922091 title "Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour" @default.
• W2899922091 cites W1212463018 @default.
• W2899922091 cites W1551381216 @default.
• W2899922091 cites W1558370786 @default.
• W2899922091 cites W1964486213 @default.
• W2899922091 cites W1978967539 @default.
• W2899922091 cites W1988107604 @default.
• W2899922091 cites W2000611318 @default.
• W2899922091 cites W2005180977 @default.
• W2899922091 cites W2006936482 @default.
• W2899922091 cites W2006976662 @default.
• W2899922091 cites W2008807830 @default.
• W2899922091 cites W2019122937 @default.
• W2899922091 cites W2024329298 @default.
• W2899922091 cites W2026381383 @default.
• W2899922091 cites W2040310909 @default.
• W2899922091 cites W2043292160 @default.
• W2899922091 cites W2045204781 @default.
• W2899922091 cites W2045290850 @default.
• W2899922091 cites W2050040190 @default.
• W2899922091 cites W2050471996 @default.
• W2899922091 cites W2055043387 @default.
• W2899922091 cites W2058970225 @default.
• W2899922091 cites W2060820317 @default.
• W2899922091 cites W2061548680 @default.
• W2899922091 cites W2066464349 @default.
• W2899922091 cites W2075320162 @default.
• W2899922091 cites W2088405395 @default.
• W2899922091 cites W2089940687 @default.
• W2899922091 cites W2091448229 @default.
• W2899922091 cites W2094032514 @default.
• W2899922091 cites W2098832713 @default.
• W2899922091 cites W2102278945 @default.
• W2899922091 cites W2103370885 @default.
• W2899922091 cites W2106812975 @default.
• W2899922091 cites W2110356447 @default.
• W2899922091 cites W2112192177 @default.
• W2899922091 cites W2118008449 @default.
• W2899922091 cites W2121918723 @default.
• W2899922091 cites W2125811643 @default.
• W2899922091 cites W2128034264 @default.
• W2899922091 cites W2128211015 @default.
• W2899922091 cites W2130313087 @default.
• W2899922091 cites W2132178765 @default.
• W2899922091 cites W2135744930 @default.
• W2899922091 cites W2140415861 @default.
• W2899922091 cites W2142204601 @default.
• W2899922091 cites W2144177541 @default.
• W2899922091 cites W2146516445 @default.
• W2899922091 cites W2151215356 @default.
• W2899922091 cites W2152835374 @default.
• W2899922091 cites W2155058605 @default.
• W2899922091 cites W2156025449 @default.
• W2899922091 cites W2161159766 @default.
• W2899922091 cites W2164154943 @default.
• W2899922091 cites W2167396518 @default.
• W2899922091 cites W2167868554 @default.
• W2899922091 cites W2169505050 @default.
• W2899922091 cites W2171797570 @default.
• W2899922091 cites W2171975260 @default.
• W2899922091 cites W2178821037 @default.
• W2899922091 cites W2224056471 @default.
• W2899922091 cites W2239812770 @default.
• W2899922091 cites W2256196375 @default.
• W2899922091 cites W2285474081 @default.
• W2899922091 cites W2439747731 @default.
• W2899922091 cites W2462359135 @default.
• W2899922091 cites W2473042943 @default.
• W2899922091 cites W2474174075 @default.
• W2899922091 cites W2510875395 @default.
• W2899922091 cites W2585603101 @default.
• W2899922091 cites W2599537561 @default.
• W2899922091 cites W2608374379 @default.
• W2899922091 cites W2759145087 @default.
• W2899922091 cites W2768202641 @default.
• W2899922091 doi "https://doi.org/10.1186/s12864-018-5158-z" @default.
• W2899922091 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6219066" @default.
• W2899922091 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30400813" @default.
• W2899922091 hasPublicationYear "2018" @default.
• W2899922091 type Work @default.
• W2899922091 sameAs 2899922091 @default.
• W2899922091 citedByCount "21" @default.
• W2899922091 countsByYear W28999220912019 @default.
• W2899922091 countsByYear W28999220912020 @default.
• W2899922091 countsByYear W28999220912021 @default.

• next