FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2901945324> ?p ?o ?g. }

• W2901945324 abstract "Abstract The characterization of mitochondrial genome has been evidenced as an efficient field of study for phylogenetic and evolutionary analysis in vertebrates including turtles. The aim of this study was to distinguish the structure and variability of the Trionychidae species mitogenomes through comparative analysis. The complete mitogenome (16796 bp) of an endangered freshwater turtle, Nilssonia nigricans was sequenced and annotated. The mitogenome encoded for 37 genes and a major non-coding control region (CR). The mitogenome was A + T biased (62.16%) and included six overlapping and 19 intergenic spacer regions. The Relative synonymous codon usage (RSCU) value was consistent among all the Trionychidae species; with the exception of significant reduction of Serine (TCG) frequency in N. nigricans , N. formosa , and R. swinhoei . In N. nigricans , most of the transfer RNAs (tRNAs) were folded into classic clover-leaf secondary structures with Watson-Crick base pairing except for trnS1 (GCT). The comparative analysis revealed that most of the tRNAs were structurally different, except for trnE (TTC), trnQ (TTG), and trnM (CAT). The structural features of tRNAs resulted ≥ 10 mismatched or wobble base pairings in 12 tRNAs, which reflects the nucleotide composition in both H- and L-strands. The mitogenome of N. nigricans also revealed two unique tandem repeats (ATTAT) 8, and (TATTA) 20 in the CR. Further, the conserved motif 5′-GACATA-3′ and stable stem-loop structure was detected in the CRs of all Trionychidae species, which play an significant role in regulating transcription and replication in the mitochondrial genome. Further, the comparative analysis of Ka/Ks indicated negative selection in most of the protein coding genes (PCGs). The constructed Maximum Likelihood (ML) phylogeny using all PCGs showed clustering of N. nigricans with N. formosa . The resulting phylogeny illustrated the similar topology as described previously and consistent with the taxonomic classification. However, more sampling from different taxonomic groups of Testudines and studies on their mitogenomics are desirable for better understanding of the phylogenetic and evolutionary relationships." @default.
• W2901945324 created "2018-11-29" @default.
• W2901945324 creator A5019166073 @default.
• W2901945324 creator A5027241234 @default.
• W2901945324 creator A5038318096 @default.
• W2901945324 creator A5044494574 @default.
• W2901945324 creator A5051147235 @default.
• W2901945324 creator A5060324468 @default.
• W2901945324 creator A5082797365 @default.
• W2901945324 creator A5088610012 @default.
• W2901945324 date "2018-11-26" @default.
• W2901945324 modified "2023-10-14" @default.
• W2901945324 title "Complete mitochondrial genome of Black Soft-shell Turtle (Nilssonia nigricans) and comparative analysis with other Trionychidae" @default.
• W2901945324 cites W1019803991 @default.
• W2901945324 cites W1598823051 @default.
• W2901945324 cites W1617947194 @default.
• W2901945324 cites W1689369637 @default.
• W2901945324 cites W1767395388 @default.
• W2901945324 cites W1780814887 @default.
• W2901945324 cites W1966900079 @default.
• W2901945324 cites W1970053406 @default.
• W2901945324 cites W1981086150 @default.
• W2901945324 cites W1987510089 @default.
• W2901945324 cites W2009368677 @default.
• W2901945324 cites W2019868138 @default.
• W2901945324 cites W2020208382 @default.
• W2901945324 cites W2026837383 @default.
• W2901945324 cites W2026967261 @default.
• W2901945324 cites W2028292140 @default.
• W2901945324 cites W2033128097 @default.
• W2901945324 cites W2036540071 @default.
• W2901945324 cites W2053843815 @default.
• W2901945324 cites W2065831499 @default.
• W2901945324 cites W2068694787 @default.
• W2901945324 cites W2076207806 @default.
• W2901945324 cites W2081779514 @default.
• W2901945324 cites W2083653513 @default.
• W2901945324 cites W2085638614 @default.
• W2901945324 cites W2096406099 @default.
• W2901945324 cites W2097382368 @default.
• W2901945324 cites W2101945200 @default.
• W2901945324 cites W2109291482 @default.
• W2901945324 cites W2109441358 @default.
• W2901945324 cites W2112407746 @default.
• W2901945324 cites W2112814753 @default.
• W2901945324 cites W2115011276 @default.
• W2901945324 cites W2116159339 @default.
• W2901945324 cites W2116838694 @default.
• W2901945324 cites W2119039084 @default.
• W2901945324 cites W2120902911 @default.
• W2901945324 cites W2127096898 @default.
• W2901945324 cites W2128863631 @default.
• W2901945324 cites W2131473084 @default.
• W2901945324 cites W2136872570 @default.
• W2901945324 cites W2141157874 @default.
• W2901945324 cites W2144368480 @default.
• W2901945324 cites W2152207030 @default.
• W2901945324 cites W2154770881 @default.
• W2901945324 cites W2154845780 @default.
• W2901945324 cites W2163541115 @default.
• W2901945324 cites W2393535458 @default.
• W2901945324 cites W2516283827 @default.
• W2901945324 cites W2599201985 @default.
• W2901945324 cites W2742258343 @default.
• W2901945324 cites W2747584165 @default.
• W2901945324 cites W2768012279 @default.
• W2901945324 cites W4238906737 @default.
• W2901945324 cites W2085521445 @default.
• W2901945324 cites W2166341487 @default.
• W2901945324 doi "https://doi.org/10.1038/s41598-018-35822-5" @default.
• W2901945324 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6255766" @default.
• W2901945324 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30478342" @default.
• W2901945324 hasPublicationYear "2018" @default.
• W2901945324 type Work @default.
• W2901945324 sameAs 2901945324 @default.
• W2901945324 citedByCount "14" @default.
• W2901945324 countsByYear W29019453242019 @default.
• W2901945324 countsByYear W29019453242020 @default.
• W2901945324 countsByYear W29019453242021 @default.
• W2901945324 countsByYear W29019453242022 @default.
• W2901945324 countsByYear W29019453242023 @default.
• W2901945324 crossrefType "journal-article" @default.
• W2901945324 hasAuthorship W2901945324A5019166073 @default.
• W2901945324 hasAuthorship W2901945324A5027241234 @default.
• W2901945324 hasAuthorship W2901945324A5038318096 @default.
• W2901945324 hasAuthorship W2901945324A5044494574 @default.
• W2901945324 hasAuthorship W2901945324A5051147235 @default.
• W2901945324 hasAuthorship W2901945324A5060324468 @default.
• W2901945324 hasAuthorship W2901945324A5082797365 @default.
• W2901945324 hasAuthorship W2901945324A5088610012 @default.
• W2901945324 hasBestOaLocation W29019453241 @default.
• W2901945324 hasConcept C104317684 @default.
• W2901945324 hasConcept C141231307 @default.
• W2901945324 hasConcept C153957851 @default.
• W2901945324 hasConcept C171288974 @default.
• W2901945324 hasConcept C193252679 @default.
• W2901945324 hasConcept C195139083 @default.
• W2901945324 hasConcept C24586158 @default.
• W2901945324 hasConcept C54355233 @default.
• W2901945324 hasConcept C67705224 @default.

• next