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• W2908684472 abstract "Abstract Detecting positive selection using genomic data is critical to understanding the role of adaptive evolution. Of particular interest in this context is sex chromosomes since they are thought to play a special role in local adaptation and speciation. We sought to circumvent the challenges associated with statistical phasing when using haplotype‐based statistics in sweep scans by benefitting from that whole chromosome haplotypes of the sex chromosomes can be obtained by resequencing of individuals of the hemizygous sex. We analyzed whole Z chromosome haplotypes from 100 females from several populations of four black and white flycatcher species (in birds, females are ZW and males ZZ). Based on integrated haplotype score (iHS) and number of segregating sites by length (nSL) statistics, we found strong and frequent haplotype structure in several regions of the Z chromosome in each species. Most of these sweep signals were population‐specific, with essentially no evidence for regions under selection shared among species. Some completed sweeps were revealed by the cross‐population extended haplotype homozygosity (XP‐EHH) statistic. Importantly, by using statistically phased Z chromosome data from resequencing of males, we failed to recover the signals of selection detected in analyses based on whole chromosome haplotypes from females; instead, what likely represent false signals of selection were frequently seen. This highlights the power issues in statistical phasing and cautions against conclusions from selection scans using such data. The detection of frequent selective sweeps on the avian Z chromosome supports a large role of sex chromosomes in adaptive evolution." @default.
• W2908684472 created "2019-01-25" @default.
• W2908684472 creator A5039786548 @default.
• W2908684472 creator A5043426503 @default.
• W2908684472 creator A5073922372 @default.
• W2908684472 date "2019-05-01" @default.
• W2908684472 modified "2023-09-27" @default.
• W2908684472 title "Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers" @default.
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• W2908684472 doi "https://doi.org/10.1111/mec.15021" @default.
• W2908684472 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6852393" @default.
• W2908684472 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/30653779" @default.
• W2908684472 hasPublicationYear "2019" @default.
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