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• W2912453742 startingPage "69" @default.
• W2912453742 abstract "The water flea Daphnia magna is a small planktonic cladoceran. D. magna has been used as a model species for ecotoxicology, as it is sensitive to environmental stressors and environmental changes. Since Daphnia is affected by culture environment and each population/strain has its own ecological and genetic characteristics, its population/strain-based genome information is useful for environmental genomic studies. In this study, we assembled and characterized the genome of D. magna. Using a high-density genetic map of D. magna xinb3, the draft genome was integrated to 10 linkage groups (LGs). The total length of the integrated genome was about 123 Mb with N50 = 10.1 Mb, and the number of scaffolds was 4193 including 10 LGs. A total of 15,721 genes were annotated after manual curation. Orthologous genes were characterized in the genome and compared with other genomes of Daphnia. In addition, we identified defense related genes such as cytochrome P450 (CYP) genes, glutathione S-transferase (GST) genes, and ATP-binding cassette (ABC) genes from the assembled D. magna genome for its potential use in molecular ecotoxicological studies in the freshwater environment. This genomic resource will be helpful to study for a better understanding on molecular mechanism in response to various pollutants." @default.
• W2912453742 created "2019-02-21" @default.
• W2912453742 creator A5002019824 @default.
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• W2912453742 creator A5069107913 @default.
• W2912453742 creator A5077621462 @default.
• W2912453742 creator A5082981280 @default.
• W2912453742 date "2019-05-01" @default.
• W2912453742 modified "2023-10-03" @default.
• W2912453742 title "The genome of the freshwater water flea Daphnia magna: A potential use for freshwater molecular ecotoxicology" @default.
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