FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2916929870> ?p ?o ?g. }

• W2916929870 abstract "ABSTRACT Comparative epigenomics, by subjecting both epigenome and genome to interspecies comparison, has become a powerful approach to reveal regulatory features of the genome. Thus elucidated regulatory features surpassed the information derived from comparison of genomic sequences alone. Here, we present EpiAlignment, a web-based tool to align genomic regions with both DNA sequence and epigenomic data. EpiAlignment takes DNA sequence and epigenomic profiles derived by ChIP-seq, DNase-seq, or ATAC-seq from two species as input data, and outputs the best semi-global alignments. These alignments are based on EpiAlignment scores, computed by a dynamic programming algorithm that accounts for both sequence alignment and epigenome similarity. For timely response, the EpiAlignment web server automatically initiates up to 140 computing threads depending on the size of user input data. For users’ convenience, we have pre-compiled the comparable human and mouse epigenome datasets in matched cell types and tissues from the Roadmap Epigenomics and ENCODE consortia. Users can either upload their own data or select pre-compiled datasets as inputs for EpiAlignment analyses. Results are presented in graphical and tabular formats where the entries can be interactively expanded to visualize additional features of these aligned regions. EpiAlignment is available at https://epialign.ucsd.edu/ ." @default.
• W2916929870 created "2019-03-02" @default.
• W2916929870 creator A5042194405 @default.
• W2916929870 creator A5043022045 @default.
• W2916929870 creator A5047976044 @default.
• W2916929870 date "2019-02-27" @default.
• W2916929870 modified "2023-09-23" @default.
• W2916929870 title "EpiAlignment: alignment with both DNA sequence and epigenomic data" @default.
• W2916929870 cites W1980197759 @default.
• W2916929870 cites W1991036278 @default.
• W2916929870 cites W1991543373 @default.
• W2916929870 cites W2032140335 @default.
• W2916929870 cites W2070021921 @default.
• W2916929870 cites W2076154138 @default.
• W2916929870 cites W2091303550 @default.
• W2916929870 cites W2113904019 @default.
• W2916929870 cites W2128016314 @default.
• W2916929870 cites W2132850778 @default.
• W2916929870 cites W2134087142 @default.
• W2916929870 cites W2151543286 @default.
• W2916929870 cites W2166242477 @default.
• W2916929870 cites W2172126177 @default.
• W2916929870 cites W2259938310 @default.
• W2916929870 cites W2336968766 @default.
• W2916929870 cites W2437107027 @default.
• W2916929870 cites W2749590410 @default.
• W2916929870 cites W2767826728 @default.
• W2916929870 cites W2884021132 @default.
• W2916929870 cites W2906190452 @default.
• W2916929870 cites W2915985519 @default.
• W2916929870 cites W2949759616 @default.
• W2916929870 cites W2967439527 @default.
• W2916929870 doi "https://doi.org/10.1101/562199" @default.
• W2916929870 hasPublicationYear "2019" @default.
• W2916929870 type Work @default.
• W2916929870 sameAs 2916929870 @default.
• W2916929870 citedByCount "0" @default.
• W2916929870 crossrefType "posted-content" @default.
• W2916929870 hasAuthorship W2916929870A5042194405 @default.
• W2916929870 hasAuthorship W2916929870A5043022045 @default.
• W2916929870 hasAuthorship W2916929870A5047976044 @default.
• W2916929870 hasBestOaLocation W29169298701 @default.
• W2916929870 hasConcept C104317684 @default.
• W2916929870 hasConcept C117717151 @default.
• W2916929870 hasConcept C121912465 @default.
• W2916929870 hasConcept C136764020 @default.
• W2916929870 hasConcept C141231307 @default.
• W2916929870 hasConcept C150194340 @default.
• W2916929870 hasConcept C189206191 @default.
• W2916929870 hasConcept C190727270 @default.
• W2916929870 hasConcept C2778112365 @default.
• W2916929870 hasConcept C2781148417 @default.
• W2916929870 hasConcept C41008148 @default.
• W2916929870 hasConcept C51679486 @default.
• W2916929870 hasConcept C54355233 @default.
• W2916929870 hasConcept C552990157 @default.
• W2916929870 hasConcept C66746571 @default.
• W2916929870 hasConcept C70721500 @default.
• W2916929870 hasConcept C71901391 @default.
• W2916929870 hasConcept C86803240 @default.
• W2916929870 hasConceptScore W2916929870C104317684 @default.
• W2916929870 hasConceptScore W2916929870C117717151 @default.
• W2916929870 hasConceptScore W2916929870C121912465 @default.
• W2916929870 hasConceptScore W2916929870C136764020 @default.
• W2916929870 hasConceptScore W2916929870C141231307 @default.
• W2916929870 hasConceptScore W2916929870C150194340 @default.
• W2916929870 hasConceptScore W2916929870C189206191 @default.
• W2916929870 hasConceptScore W2916929870C190727270 @default.
• W2916929870 hasConceptScore W2916929870C2778112365 @default.
• W2916929870 hasConceptScore W2916929870C2781148417 @default.
• W2916929870 hasConceptScore W2916929870C41008148 @default.
• W2916929870 hasConceptScore W2916929870C51679486 @default.
• W2916929870 hasConceptScore W2916929870C54355233 @default.
• W2916929870 hasConceptScore W2916929870C552990157 @default.
• W2916929870 hasConceptScore W2916929870C66746571 @default.
• W2916929870 hasConceptScore W2916929870C70721500 @default.
• W2916929870 hasConceptScore W2916929870C71901391 @default.
• W2916929870 hasConceptScore W2916929870C86803240 @default.
• W2916929870 hasLocation W29169298701 @default.
• W2916929870 hasLocation W29169298702 @default.
• W2916929870 hasOpenAccess W2916929870 @default.
• W2916929870 hasPrimaryLocation W29169298701 @default.
• W2916929870 hasRelatedWork W1779624800 @default.
• W2916929870 hasRelatedWork W2005509307 @default.
• W2916929870 hasRelatedWork W2021453194 @default.
• W2916929870 hasRelatedWork W2060360855 @default.
• W2916929870 hasRelatedWork W2101071606 @default.
• W2916929870 hasRelatedWork W2103584094 @default.
• W2916929870 hasRelatedWork W2120130751 @default.
• W2916929870 hasRelatedWork W2124410431 @default.
• W2916929870 hasRelatedWork W2132522861 @default.
• W2916929870 hasRelatedWork W2136292095 @default.
• W2916929870 hasRelatedWork W2143792011 @default.
• W2916929870 hasRelatedWork W2158272128 @default.
• W2916929870 hasRelatedWork W2338825379 @default.
• W2916929870 hasRelatedWork W2391440604 @default.
• W2916929870 hasRelatedWork W2428578951 @default.
• W2916929870 hasRelatedWork W2742401554 @default.
• W2916929870 hasRelatedWork W2763115568 @default.
• W2916929870 hasRelatedWork W2781960152 @default.

• next