FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2922485723> ?p ?o ?g. }

• W2922485723 abstract "In this paper, we systematically review weighted persistent homology (WPH) models and their applications in biomolecular data analysis. Essentially, the weight value, which reflects physical, chemical and biological properties, can be assigned to vertices (atom centers), edges (bonds), or higher order simplexes (cluster of atoms), depending on the biomolecular structure, function, and dynamics properties. Further, we propose the first localized weighted persistent homology (LWPH). Inspired by the great success of element specific persistent homology (ESPH), we do not treat biomolecules as an inseparable system like all previous weighted models, instead we decompose them into a series of local domains, which may be overlapped with each other. The general persistent homology or weighted persistent homology analysis is then applied on each of these local domains. In this way, functional properties, that are embedded in local structures, can be revealed. Our model has been applied to systematically studying DNA structures. It has been found that our LWPH based features can be used to successfully discriminate the A-, B-, and Z-types of DNA. More importantly, our LWPH based PCA model can identify two configurational states of DNA structure in ion liquid environment, which can be revealed only by the complicated helical coordinate system. The great consistence with the helical-coordinate model demonstrates that our model captures local structure variations so well that it is comparable with geometric models. Moreover, geometric measurements are usually defined in very local regions. For instance, the helical-coordinate system is limited to one or two basepairs. However, our LWPH can quantitatively characterize structure information in local regions or domains with arbitrary sizes and shapes, where traditional geometrical measurements fail." @default.
• W2922485723 created "2019-03-22" @default.
• W2922485723 creator A5011455423 @default.
• W2922485723 creator A5014682664 @default.
• W2922485723 creator A5059418175 @default.
• W2922485723 creator A5062129951 @default.
• W2922485723 creator A5084610901 @default.
• W2922485723 date "2019-03-07" @default.
• W2922485723 modified "2023-10-14" @default.
• W2922485723 title "Weighted persistent homology for biomolecular data analysis" @default.
• W2922485723 cites W107886322 @default.
• W2922485723 cites W13637651 @default.
• W2922485723 cites W1481632020 @default.
• W2922485723 cites W1496383623 @default.
• W2922485723 cites W1654438081 @default.
• W2922485723 cites W181649851 @default.
• W2922485723 cites W1840116729 @default.
• W2922485723 cites W1880168459 @default.
• W2922485723 cites W1960392612 @default.
• W2922485723 cites W1967548201 @default.
• W2922485723 cites W1967760180 @default.
• W2922485723 cites W1972488821 @default.
• W2922485723 cites W1973076897 @default.
• W2922485723 cites W1991566301 @default.
• W2922485723 cites W2002165972 @default.
• W2922485723 cites W2005356779 @default.
• W2922485723 cites W2008318377 @default.
• W2922485723 cites W2024820200 @default.
• W2922485723 cites W2026940923 @default.
• W2922485723 cites W2027130342 @default.
• W2922485723 cites W2030523990 @default.
• W2922485723 cites W2043012057 @default.
• W2922485723 cites W2062874539 @default.
• W2922485723 cites W2071391326 @default.
• W2922485723 cites W2083505163 @default.
• W2922485723 cites W2086392476 @default.
• W2922485723 cites W2104339857 @default.
• W2922485723 cites W2106281763 @default.
• W2922485723 cites W2107605271 @default.
• W2922485723 cites W2113792310 @default.
• W2922485723 cites W2123538828 @default.
• W2922485723 cites W2129904086 @default.
• W2922485723 cites W2130479394 @default.
• W2922485723 cites W2131760256 @default.
• W2922485723 cites W2137556660 @default.
• W2922485723 cites W2144044408 @default.
• W2922485723 cites W2149185044 @default.
• W2922485723 cites W2149203023 @default.
• W2922485723 cites W2151335375 @default.
• W2922485723 cites W2163339655 @default.
• W2922485723 cites W2168349010 @default.
• W2922485723 cites W2253971223 @default.
• W2922485723 cites W2271786311 @default.
• W2922485723 cites W2396707602 @default.
• W2922485723 cites W2424211690 @default.
• W2922485723 cites W2570901095 @default.
• W2922485723 cites W2610142609 @default.
• W2922485723 cites W2613392566 @default.
• W2922485723 cites W2725970836 @default.
• W2922485723 cites W2733638363 @default.
• W2922485723 cites W2741292700 @default.
• W2922485723 cites W2773405722 @default.
• W2922485723 cites W2791551438 @default.
• W2922485723 cites W2797966646 @default.
• W2922485723 cites W2912929541 @default.
• W2922485723 cites W2963188519 @default.
• W2922485723 cites W2963684499 @default.
• W2922485723 cites W2963833291 @default.
• W2922485723 cites W2963883198 @default.
• W2922485723 cites W2964237352 @default.
• W2922485723 cites W3013843370 @default.
• W2922485723 cites W95757166 @default.
• W2922485723 cites W2910383053 @default.
• W2922485723 doi "https://doi.org/10.48550/arxiv.1903.02890" @default.
• W2922485723 hasPublicationYear "2019" @default.
• W2922485723 type Work @default.
• W2922485723 sameAs 2922485723 @default.
• W2922485723 citedByCount "0" @default.
• W2922485723 crossrefType "posted-content" @default.
• W2922485723 hasAuthorship W2922485723A5011455423 @default.
• W2922485723 hasAuthorship W2922485723A5014682664 @default.
• W2922485723 hasAuthorship W2922485723A5059418175 @default.
• W2922485723 hasAuthorship W2922485723A5062129951 @default.
• W2922485723 hasAuthorship W2922485723A5084610901 @default.
• W2922485723 hasBestOaLocation W29224857231 @default.
• W2922485723 hasConcept C11413529 @default.
• W2922485723 hasConcept C114614502 @default.
• W2922485723 hasConcept C121332964 @default.
• W2922485723 hasConcept C165525559 @default.
• W2922485723 hasConcept C169627665 @default.
• W2922485723 hasConcept C181199279 @default.
• W2922485723 hasConcept C186060115 @default.
• W2922485723 hasConcept C2874115 @default.
• W2922485723 hasConcept C33923547 @default.
• W2922485723 hasConcept C41008148 @default.
• W2922485723 hasConcept C46141821 @default.
• W2922485723 hasConcept C515207424 @default.
• W2922485723 hasConcept C54355233 @default.
• W2922485723 hasConcept C62438384 @default.
• W2922485723 hasConcept C86803240 @default.

• next