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• W2952814717 abstract "In recent years, the assay for transposase-accessible chromatin using sequencing (ATAC-Seq) has become a fundamental tool of epigenomic research. However, it is difficult to perform this technique on frozen samples because freezing cells before extracting nuclei can impair nuclear integrity and alter chromatin structure, especially in fragile cells such as neurons. Our aim was to develop a protocol for freezing neuronal cells that is compatible with ATAC-Seq; we focused on a disease-relevant cell type, namely motor neurons differentiated from induced pluripotent stem cells (iMNs) from a patient affected by spinal muscular atrophy. We found that while flash-frozen iMNs are not suitable for ATAC-Seq, the assay is successful with slow-cooled cryopreserved cells. Using this method, we were able to isolate high quality, intact nuclei, and we verified that epigenetic results from fresh and cryopreserved iMNs quantitatively agree." @default.
• W2952814717 created "2019-06-27" @default.
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• W2952814717 date "2016-05-01" @default.
• W2952814717 modified "2023-10-12" @default.
• W2952814717 title "Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells" @default.
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• W2952814717 doi "https://doi.org/10.1038/srep25474" @default.
• W2952814717 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4857123" @default.
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