Matches in SemOpenAlex for { <https://semopenalex.org/work/W2960696813> ?p ?o ?g. }
Showing items 1 to 99 of
99
with 100 items per page.
- W2960696813 abstract "We consider probabilistic programming for birth-death models of evolution and introduce a new widely-applicable inference method that combines an extension of the alive particle filter (APF) with automatic Rao-Blackwellization via delayed sampling. Birth-death models of evolution are an important family of phylogenetic models of the diversification processes that lead to evolutionary trees. Probabilistic programming languages (PPLs) give phylogeneticists a new and exciting tool: their models can be implemented as probabilistic programs with just a basic knowledge of programming. The general inference methods in PPLs reduce the need for external experts, allow quick prototyping and testing, and accelerate the development and deployment of new models. We show how these birth-death models can be implemented as simple programs in existing PPLs, and demonstrate the usefulness of the proposed inference method for such models. For the popular BiSSE model the method yields an increase of the effective sample size and the conditional acceptance rate by a factor of 30 in comparison with a standard bootstrap particle filter. Although concentrating on phylogenetics, the extended APF is a general inference method that shows its strength in situations where particles are often assigned zero weight. In the case when the weights are always positive, the extra cost of using the APF rather than the bootstrap particle filter is negligible, making our method a suitable drop-in replacement for the bootstrap particle filter in probabilistic programming inference." @default.
- W2960696813 created "2019-07-23" @default.
- W2960696813 creator A5048208979 @default.
- W2960696813 creator A5069900224 @default.
- W2960696813 creator A5083090794 @default.
- W2960696813 creator A5087209008 @default.
- W2960696813 date "2019-07-10" @default.
- W2960696813 modified "2023-09-27" @default.
- W2960696813 title "Probabilistic programming for birth-death models of evolution using an alive particle filter with delayed sampling" @default.
- W2960696813 cites W1511986666 @default.
- W2960696813 cites W1844453107 @default.
- W2960696813 cites W1890754682 @default.
- W2960696813 cites W2026062398 @default.
- W2960696813 cites W2031294093 @default.
- W2960696813 cites W2056760934 @default.
- W2960696813 cites W2098613108 @default.
- W2960696813 cites W2102641709 @default.
- W2960696813 cites W2110835349 @default.
- W2960696813 cites W2115337504 @default.
- W2960696813 cites W2127495923 @default.
- W2960696813 cites W2138309709 @default.
- W2960696813 cites W2147357149 @default.
- W2960696813 cites W2151062029 @default.
- W2960696813 cites W2161444534 @default.
- W2960696813 cites W2195963939 @default.
- W2960696813 cites W2408731419 @default.
- W2960696813 cites W2478027467 @default.
- W2960696813 cites W2511514052 @default.
- W2960696813 cites W2539792571 @default.
- W2960696813 cites W2577537660 @default.
- W2960696813 cites W2746487413 @default.
- W2960696813 cites W2808618339 @default.
- W2960696813 cites W2962837791 @default.
- W2960696813 cites W2963709414 @default.
- W2960696813 cites W2964321317 @default.
- W2960696813 hasPublicationYear "2019" @default.
- W2960696813 type Work @default.
- W2960696813 sameAs 2960696813 @default.
- W2960696813 citedByCount "0" @default.
- W2960696813 crossrefType "posted-content" @default.
- W2960696813 hasAuthorship W2960696813A5048208979 @default.
- W2960696813 hasAuthorship W2960696813A5069900224 @default.
- W2960696813 hasAuthorship W2960696813A5083090794 @default.
- W2960696813 hasAuthorship W2960696813A5087209008 @default.
- W2960696813 hasConcept C106131492 @default.
- W2960696813 hasConcept C110332635 @default.
- W2960696813 hasConcept C11413529 @default.
- W2960696813 hasConcept C114289077 @default.
- W2960696813 hasConcept C144024400 @default.
- W2960696813 hasConcept C149923435 @default.
- W2960696813 hasConcept C154945302 @default.
- W2960696813 hasConcept C2776214188 @default.
- W2960696813 hasConcept C2908647359 @default.
- W2960696813 hasConcept C31972630 @default.
- W2960696813 hasConcept C41008148 @default.
- W2960696813 hasConcept C49937458 @default.
- W2960696813 hasConcept C52421305 @default.
- W2960696813 hasConcept C65990518 @default.
- W2960696813 hasConceptScore W2960696813C106131492 @default.
- W2960696813 hasConceptScore W2960696813C110332635 @default.
- W2960696813 hasConceptScore W2960696813C11413529 @default.
- W2960696813 hasConceptScore W2960696813C114289077 @default.
- W2960696813 hasConceptScore W2960696813C144024400 @default.
- W2960696813 hasConceptScore W2960696813C149923435 @default.
- W2960696813 hasConceptScore W2960696813C154945302 @default.
- W2960696813 hasConceptScore W2960696813C2776214188 @default.
- W2960696813 hasConceptScore W2960696813C2908647359 @default.
- W2960696813 hasConceptScore W2960696813C31972630 @default.
- W2960696813 hasConceptScore W2960696813C41008148 @default.
- W2960696813 hasConceptScore W2960696813C49937458 @default.
- W2960696813 hasConceptScore W2960696813C52421305 @default.
- W2960696813 hasConceptScore W2960696813C65990518 @default.
- W2960696813 hasLocation W29606968131 @default.
- W2960696813 hasOpenAccess W2960696813 @default.
- W2960696813 hasPrimaryLocation W29606968131 @default.
- W2960696813 hasRelatedWork W145458542 @default.
- W2960696813 hasRelatedWork W151665411 @default.
- W2960696813 hasRelatedWork W1557726990 @default.
- W2960696813 hasRelatedWork W2072502078 @default.
- W2960696813 hasRelatedWork W2121693152 @default.
- W2960696813 hasRelatedWork W2417731353 @default.
- W2960696813 hasRelatedWork W2601546952 @default.
- W2960696813 hasRelatedWork W2736297450 @default.
- W2960696813 hasRelatedWork W2778904036 @default.
- W2960696813 hasRelatedWork W2809378393 @default.
- W2960696813 hasRelatedWork W2902642970 @default.
- W2960696813 hasRelatedWork W2903153925 @default.
- W2960696813 hasRelatedWork W2945598669 @default.
- W2960696813 hasRelatedWork W2950236988 @default.
- W2960696813 hasRelatedWork W2951392481 @default.
- W2960696813 hasRelatedWork W2959696098 @default.
- W2960696813 hasRelatedWork W3008255512 @default.
- W2960696813 hasRelatedWork W3016582770 @default.
- W2960696813 hasRelatedWork W3141482514 @default.
- W2960696813 hasRelatedWork W2988743537 @default.
- W2960696813 isParatext "false" @default.
- W2960696813 isRetracted "false" @default.
- W2960696813 magId "2960696813" @default.
- W2960696813 workType "article" @default.