FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2963287394> ?p ?o ?g. }

• W2963287394 endingPage "e0219207" @default.
• W2963287394 startingPage "e0219207" @default.
• W2963287394 abstract "The distribution and diversity of RNA viruses in fungi is incompletely understood due to the often cryptic nature of mycoviral infections and the focused study of primarily pathogenic and/or economically important fungi. As most viruses that are known to infect fungi possess either single-stranded or double-stranded RNA genomes, transcriptomic data provides the opportunity to query for viruses in diverse fungal samples without any a priori knowledge of virus infection. Here we describe a systematic survey of all transcriptomic datasets from fungi belonging to the subphylum Pezizomycotina. Using a simple but effective computational pipeline that uses reads discarded during normal RNA-seq analyses, followed by identification of a viral RNA-dependent RNA polymerase (RdRP) motif in de novo assembled contigs, 59 viruses from 44 different fungi were identified. Among the viruses identified, 88% were determined to be new species and 68% are, to our knowledge, the first virus described from the fungal species. Comprehensive analyses of both nucleotide and inferred protein sequences characterize the phylogenetic relationships between these viruses and the known set of mycoviral sequences and support the classification of up to four new families and two new genera. Thus the results provide a deeper understanding of the scope of mycoviral diversity while also increasing the distribution of fungal hosts. Further, this study demonstrates the suitability of analyzing RNA-seq data to facilitate rapid discovery of new viruses." @default.
• W2963287394 created "2019-07-30" @default.
• W2963287394 creator A5037065985 @default.
• W2963287394 creator A5039889442 @default.
• W2963287394 creator A5051500041 @default.
• W2963287394 creator A5070826985 @default.
• W2963287394 date "2019-07-24" @default.
• W2963287394 modified "2023-10-14" @default.
• W2963287394 title "Hiding in plain sight: New virus genomes discovered via a systematic analysis of fungal public transcriptomes" @default.
• W2963287394 cites W1582561043 @default.
• W2963287394 cites W1589451869 @default.
• W2963287394 cites W1898899852 @default.
• W2963287394 cites W1919707350 @default.
• W2963287394 cites W1955049672 @default.
• W2963287394 cites W1973274945 @default.
• W2963287394 cites W2006621877 @default.
• W2963287394 cites W2007420324 @default.
• W2963287394 cites W2007808213 @default.
• W2963287394 cites W2008680019 @default.
• W2963287394 cites W2011657487 @default.
• W2963287394 cites W2012599911 @default.
• W2963287394 cites W2014374098 @default.
• W2963287394 cites W2017686560 @default.
• W2963287394 cites W2020263469 @default.
• W2963287394 cites W2021187245 @default.
• W2963287394 cites W2023359241 @default.
• W2963287394 cites W202544020 @default.
• W2963287394 cites W2026002521 @default.
• W2963287394 cites W2029410561 @default.
• W2963287394 cites W2029555654 @default.
• W2963287394 cites W2034905675 @default.
• W2963287394 cites W2035045872 @default.
• W2963287394 cites W2036897871 @default.
• W2963287394 cites W2038230177 @default.
• W2963287394 cites W2042410606 @default.
• W2963287394 cites W2042464318 @default.
• W2963287394 cites W2045000874 @default.
• W2963287394 cites W2046778918 @default.
• W2963287394 cites W2049866988 @default.
• W2963287394 cites W2055312872 @default.
• W2963287394 cites W2056000469 @default.
• W2963287394 cites W2056724191 @default.
• W2963287394 cites W2062209710 @default.
• W2963287394 cites W2063343963 @default.
• W2963287394 cites W2065832641 @default.
• W2963287394 cites W2072486425 @default.
• W2963287394 cites W2075221280 @default.
• W2963287394 cites W2078872274 @default.
• W2963287394 cites W2082146375 @default.
• W2963287394 cites W2085436536 @default.
• W2963287394 cites W2086467908 @default.
• W2963287394 cites W2095425492 @default.
• W2963287394 cites W2103883889 @default.
• W2963287394 cites W2104611815 @default.
• W2963287394 cites W2106870343 @default.
• W2963287394 cites W2111523090 @default.
• W2963287394 cites W2114688670 @default.
• W2963287394 cites W2115888213 @default.
• W2963287394 cites W2117879815 @default.
• W2963287394 cites W2118848130 @default.
• W2963287394 cites W2119630403 @default.
• W2963287394 cites W2123991050 @default.
• W2963287394 cites W2125125256 @default.
• W2963287394 cites W2127493394 @default.
• W2963287394 cites W2129443011 @default.
• W2963287394 cites W2131903353 @default.
• W2963287394 cites W2133585902 @default.
• W2963287394 cites W2134109026 @default.
• W2963287394 cites W2137523774 @default.
• W2963287394 cites W2137704064 @default.
• W2963287394 cites W2140767303 @default.
• W2963287394 cites W2145316545 @default.
• W2963287394 cites W2149322829 @default.
• W2963287394 cites W2157076020 @default.
• W2963287394 cites W2157101431 @default.
• W2963287394 cites W2157483415 @default.
• W2963287394 cites W2158317043 @default.
• W2963287394 cites W2160378127 @default.
• W2963287394 cites W2162371815 @default.
• W2963287394 cites W2165215330 @default.
• W2963287394 cites W2167019031 @default.
• W2963287394 cites W2168178166 @default.
• W2963287394 cites W2168696662 @default.
• W2963287394 cites W2170074731 @default.
• W2963287394 cites W2170551349 @default.
• W2963287394 cites W2170970303 @default.
• W2963287394 cites W2179969390 @default.
• W2963287394 cites W2194118776 @default.
• W2963287394 cites W2204639623 @default.
• W2963287394 cites W2273643919 @default.
• W2963287394 cites W2290620473 @default.
• W2963287394 cites W2313184434 @default.
• W2963287394 cites W2323862864 @default.
• W2963287394 cites W2345756881 @default.
• W2963287394 cites W2405737330 @default.
• W2963287394 cites W2414735070 @default.
• W2963287394 cites W2463203885 @default.
• W2963287394 cites W2509023958 @default.

• next