Matches in SemOpenAlex for { <https://semopenalex.org/work/W2967272032> ?p ?o ?g. }
- W2967272032 endingPage "382" @default.
- W2967272032 startingPage "374" @default.
- W2967272032 abstract "Gelsemium elegans (G. elegans) (2n = 2x = 16) is genus of flowering plants belonging to the Gelsemicaeae family.Here, a high-quality genome assembly using the Oxford Nanopore Technologies (ONT) platform and high-throughput chromosome conformation capture techniques (Hi-C) were used.A total of 56.11 Gb of raw GridION X5 platform ONT reads (6.23 Gb per cell) were generated. After filtering, 53.45 Gb of clean reads were obtained, giving 160 × coverage depth. The de novo genome assemblies 335.13 Mb, close to the 338 Mb estimated by k-mer analysis, was generated with contig N50 of 10.23 Mb. The vast majority (99.2%) of the G. elegans assembled sequence was anchored onto 8 pseudo-chromosomes. The genome completeness was then evaluated and 1338 of the 1440 conserved genes (92.9%) could be found in the assembly. Genome annotation revealed that 43.16% of the G. elegans genome is composed of repetitive elements and 23.9% is composed of long terminal repeat elements. We predicted 26,768 protein-coding genes, of which 84.56% were functionally annotated.The genomic sequences of G. elegans could be a valuable source for comparative genomic analysis in the Gelsemicaeae family and will be useful for understanding the phylogenetic relationships of the indole alkaloid metabolism." @default.
- W2967272032 created "2019-08-22" @default.
- W2967272032 creator A5003759585 @default.
- W2967272032 creator A5025429022 @default.
- W2967272032 creator A5030398000 @default.
- W2967272032 creator A5036682412 @default.
- W2967272032 creator A5044244462 @default.
- W2967272032 creator A5044738978 @default.
- W2967272032 creator A5049495157 @default.
- W2967272032 creator A5060297284 @default.
- W2967272032 creator A5064487134 @default.
- W2967272032 creator A5072568834 @default.
- W2967272032 creator A5091251325 @default.
- W2967272032 date "2020-02-01" @default.
- W2967272032 modified "2023-10-14" @default.
- W2967272032 title "Whole-genome sequencing and analysis of the Chinese herbal plant Gelsemium elegans" @default.
- W2967272032 cites W1022002259 @default.
- W2967272032 cites W1482190741 @default.
- W2967272032 cites W1519765314 @default.
- W2967272032 cites W1568479515 @default.
- W2967272032 cites W1903350925 @default.
- W2967272032 cites W1968925921 @default.
- W2967272032 cites W1982855075 @default.
- W2967272032 cites W1983180971 @default.
- W2967272032 cites W1994145712 @default.
- W2967272032 cites W2008856488 @default.
- W2967272032 cites W2016459192 @default.
- W2967272032 cites W2039811694 @default.
- W2967272032 cites W2045843097 @default.
- W2967272032 cites W2052435665 @default.
- W2967272032 cites W2066145737 @default.
- W2967272032 cites W2091448229 @default.
- W2967272032 cites W2096128575 @default.
- W2967272032 cites W2099589970 @default.
- W2967272032 cites W2102278945 @default.
- W2967272032 cites W2104696612 @default.
- W2967272032 cites W2108108770 @default.
- W2967272032 cites W2110335151 @default.
- W2967272032 cites W2118970397 @default.
- W2967272032 cites W2118970626 @default.
- W2967272032 cites W2121840477 @default.
- W2967272032 cites W2122821321 @default.
- W2967272032 cites W2129003604 @default.
- W2967272032 cites W2132926880 @default.
- W2967272032 cites W2133579817 @default.
- W2967272032 cites W2141052558 @default.
- W2967272032 cites W2141550398 @default.
- W2967272032 cites W2142678478 @default.
- W2967272032 cites W2145565627 @default.
- W2967272032 cites W2149429041 @default.
- W2967272032 cites W2152605077 @default.
- W2967272032 cites W2155628349 @default.
- W2967272032 cites W2159038577 @default.
- W2967272032 cites W2159957100 @default.
- W2967272032 cites W2163346964 @default.
- W2967272032 cites W2170551349 @default.
- W2967272032 cites W2299815524 @default.
- W2967272032 cites W2397692114 @default.
- W2967272032 cites W2421940487 @default.
- W2967272032 cites W2466643007 @default.
- W2967272032 cites W2469102908 @default.
- W2967272032 cites W2594081754 @default.
- W2967272032 cites W2607669908 @default.
- W2967272032 cites W2609149669 @default.
- W2967272032 cites W2610080502 @default.
- W2967272032 cites W2617803937 @default.
- W2967272032 cites W2726347871 @default.
- W2967272032 cites W2727092567 @default.
- W2967272032 cites W2735459054 @default.
- W2967272032 cites W2752852083 @default.
- W2967272032 cites W2766848373 @default.
- W2967272032 cites W2772933620 @default.
- W2967272032 cites W2787997524 @default.
- W2967272032 cites W2792035812 @default.
- W2967272032 cites W2800563766 @default.
- W2967272032 cites W2895992437 @default.
- W2967272032 cites W2902012935 @default.
- W2967272032 cites W2950354111 @default.
- W2967272032 cites W2951195494 @default.
- W2967272032 cites W2951912016 @default.
- W2967272032 cites W2952020649 @default.
- W2967272032 doi "https://doi.org/10.1016/j.apsb.2019.08.004" @default.
- W2967272032 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7016290" @default.
- W2967272032 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/32082980" @default.
- W2967272032 hasPublicationYear "2020" @default.
- W2967272032 type Work @default.
- W2967272032 sameAs 2967272032 @default.
- W2967272032 citedByCount "25" @default.
- W2967272032 countsByYear W29672720322019 @default.
- W2967272032 countsByYear W29672720322020 @default.
- W2967272032 countsByYear W29672720322021 @default.
- W2967272032 countsByYear W29672720322022 @default.
- W2967272032 countsByYear W29672720322023 @default.
- W2967272032 crossrefType "journal-article" @default.
- W2967272032 hasAuthorship W2967272032A5003759585 @default.
- W2967272032 hasAuthorship W2967272032A5025429022 @default.
- W2967272032 hasAuthorship W2967272032A5030398000 @default.
- W2967272032 hasAuthorship W2967272032A5036682412 @default.