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• W2979927426 endingPage "5089" @default.
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• W2979927426 abstract "Chilling stress is considered the major abiotic stress affecting the growth, development, and yield of rice. To understand the transcriptomic responses and methylation regulation of rice in response to chilling stress, we analyzed a cold-tolerant variety of rice (Oryza sativa L. cv. P427). The physiological properties, transcriptome, and methylation of cold-tolerant P427 seedlings under low-temperature stress (2–3 °C) were investigated. We found that P427 exhibited enhanced tolerance to low temperature, likely via increasing antioxidant enzyme activity and promoting the accumulation of abscisic acid (ABA). The Methylated DNA Immunoprecipitation Sequencing (MeDIP-seq) data showed that the number of methylation-altered genes was highest in P427 (5496) and slightly lower in Nipponbare (Nip) and 9311 (4528 and 3341, respectively), and only 2.7% (292) of methylation genes were detected as common differentially methylated genes (DMGs) related to cold tolerance in the three varieties. Transcriptome analyses revealed that 1654 genes had specifically altered expression in P427 under cold stress. These genes mainly belonged to transcription factor families, such as Myeloblastosis (MYB), APETALA2/ethylene-responsive element binding proteins (AP2-EREBP), NAM-ATAF-CUC (NAC) and WRKY. Fifty-one genes showed simultaneous methylation and expression level changes. Quantitative RT-PCR (qRT-PCR) results showed that genes involved in the ICE (inducer of CBF expression)-CBF (C-repeat binding factor)—COR (cold-regulated) pathway were highly expressed under cold stress, including the WRKY genes. The homologous gene Os03g0610900 of the open stomatal 1 (OST1) in rice was obtained by evolutionary tree analysis. Methylation in Os03g0610900 gene promoter region decreased, and the expression level of Os03g0610900 increased, suggesting that cold stress may lead to demethylation and increased gene expression of Os03g0610900. The ICE-CBF-COR pathway plays a vital role in the cold tolerance of the rice cultivar P427. Overall, this study demonstrates the differences in methylation and gene expression levels of P427 in response to low-temperature stress, providing a foundation for further investigations of the relationship between environmental stress, DNA methylation, and gene expression in rice." @default.
• W2979927426 created "2019-10-18" @default.
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• W2979927426 date "2019-10-14" @default.
• W2979927426 modified "2023-10-12" @default.
• W2979927426 title "The Methylation Patterns and Transcriptional Responses to Chilling Stress at the Seedling Stage in Rice" @default.
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• W2979927426 cites W1974097587 @default.
• W2979927426 cites W1981102202 @default.
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• W2979927426 cites W2009805142 @default.
• W2979927426 cites W2015701326 @default.
• W2979927426 cites W2024520398 @default.
• W2979927426 cites W2059979506 @default.
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• W2979927426 cites W2067151470 @default.
• W2979927426 cites W2067660931 @default.
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• W2979927426 cites W2077602751 @default.
• W2979927426 cites W2084075430 @default.
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• W2979927426 cites W2111482395 @default.
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• W2979927426 cites W2135212876 @default.
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• W2979927426 cites W2143815545 @default.
• W2979927426 cites W2146139364 @default.
• W2979927426 cites W2150574779 @default.
• W2979927426 cites W2152746275 @default.
• W2979927426 cites W2162905217 @default.
• W2979927426 cites W2163039945 @default.
• W2979927426 cites W2163117809 @default.
• W2979927426 cites W2163250539 @default.
• W2979927426 cites W2166976364 @default.
• W2979927426 cites W2168023061 @default.
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• W2979927426 doi "https://doi.org/10.3390/ijms20205089" @default.
• W2979927426 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6829347" @default.
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• W2979927426 hasPublicationYear "2019" @default.
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