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- W2989978582 startingPage "280" @default.
- W2989978582 abstract "Structural changes of proteins are closely related with their molecular function. We previously developed a computational tool, Motion Tree (MT), to compare protein structures and describe structural changes using solely the Cα atoms. Here, we have extended MT to incorporate all heavy atoms to analyze side chain-related (SCR) motions. All Atom Motion Tree (AAMT) was applied to 76 proteins that exhibited a simple domain motion identified by MT. AAMT also detected 921 SCR motions. We examined the coupling of domain and SCR motions and classified the structural changes in terms of coupling. The statistical results indicated that it is common for coupled SCR motions to also couple with the domain motion. The classification correlates properties of domain motions and SCR motions. The AAMT results suggest that a large domain motion with a sizable domain boundary is accompanied by SCR motions composed of more than a single residue, which induces further couplings of SCR motions." @default.
- W2989978582 created "2019-12-05" @default.
- W2989978582 creator A5004774267 @default.
- W2989978582 creator A5088515417 @default.
- W2989978582 date "2019-01-01" @default.
- W2989978582 modified "2023-09-23" @default.
- W2989978582 title "All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins" @default.
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- W2989978582 doi "https://doi.org/10.2142/biophysico.16.0_280" @default.
- W2989978582 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6976028" @default.
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