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• W2995331467 startingPage "936" @default.
• W2995331467 abstract "Microsatellite (simple sequence repeats, SSRs) markers are some of the most widely used markers in marker-assisted breeding. As one type of functional markers, MicroRNA-based SSR (miRNA-SSR) markers have been exploited mainly in animals, and the development and characterization of miRNA-SSR markers in plants are still limited. In the present study, miRNA-SSR markers for Medicago truncatula were developed and their cross-species transferability was assessed in six leguminous species. A total of 169 primer pairs were successfully designed from 130 M. truncatula miRNA genes, the majority of which were mononucleotide repeats (70.41%), followed by dinucleotide repeats (14.20%), compound repeats (11.24%), and trinucleotide repeats (4.14%). Functional classification of SSR-containing miRNA genes showed that all targets could be grouped into three gene ontology (GO) categories: biological process (17), molecular function (11), and cellular component (14). The miRNA-SSR markers had a high level of transferability in other six leguminous species, ranging from 74.56% to 90.53%. Furthermore, polymorphisms of 25 Mt-miRNA-SSR markers were used to evaluate their presence in 20 alfalfa accessions, and the allele number per marker varied from 3 to 18 with an average of 7.88, the polymorphism information content (PIC) values ranged from 0.39 to 0.89 with an average of 0.71. The present study is the first time M. truncatula miRNA-SSRs were developed and characterized and their utility in transferability demonstrated. These novel markers will be valuable for genetic diversity analysis, marker-assisted selection and comparative genomic studies in leguminous and non-leguminous species." @default.
• W2995331467 created "2019-12-26" @default.
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• W2995331467 date "2019-12-13" @default.
• W2995331467 modified "2023-10-16" @default.
• W2995331467 title "Genome‐wide development of <scp>microRNA</scp> ‐based <scp>SSR</scp> markers in <i>Medicago truncatula</i> with their transferability analysis and utilization in related legume species" @default.
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• W2995331467 doi "https://doi.org/10.1002/9781119409144.ch121" @default.
• W2995331467 hasPublicationYear "2019" @default.
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