FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2995402973> ?p ?o ?g. }

• W2995402973 abstract "Abstract Background Mass spectrometry imaging is increasingly used in biological and translational research because it has the ability to determine the spatial distribution of hundreds of analytes in a sample. Being at the interface of proteomics/metabolomics and imaging, the acquired datasets are large and complex and often analyzed with proprietary software or in-house scripts, which hinders reproducibility. Open source software solutions that enable reproducible data analysis often require programming skills and are therefore not accessible to many mass spectrometry imaging (MSI) researchers. Findings We have integrated 18 dedicated mass spectrometry imaging tools into the Galaxy framework to allow accessible, reproducible, and transparent data analysis. Our tools are based on Cardinal, MALDIquant, and scikit-image and enable all major MSI analysis steps such as quality control, visualization, preprocessing, statistical analysis, and image co-registration. Furthermore, we created hands-on training material for use cases in proteomics and metabolomics. To demonstrate the utility of our tools, we re-analyzed a publicly available N-linked glycan imaging dataset. By providing the entire analysis history online, we highlight how the Galaxy framework fosters transparent and reproducible research. Conclusion The Galaxy framework has emerged as a powerful analysis platform for the analysis of MSI data with ease of use and access, together with high levels of reproducibility and transparency." @default.
• W2995402973 created "2019-12-26" @default.
• W2995402973 creator A5006559585 @default.
• W2995402973 creator A5010762716 @default.
• W2995402973 creator A5022648989 @default.
• W2995402973 creator A5046946899 @default.
• W2995402973 creator A5050843400 @default.
• W2995402973 creator A5059435558 @default.
• W2995402973 creator A5062987908 @default.
• W2995402973 creator A5065703260 @default.
• W2995402973 creator A5069724515 @default.
• W2995402973 creator A5074537923 @default.
• W2995402973 date "2019-12-01" @default.
• W2995402973 modified "2023-10-16" @default.
• W2995402973 title "Accessible and reproducible mass spectrometry imaging data analysis in Galaxy" @default.
• W2995402973 cites W1840399855 @default.
• W2995402973 cites W1971878887 @default.
• W2995402973 cites W1991694145 @default.
• W2995402973 cites W1999361613 @default.
• W2995402973 cites W2015159529 @default.
• W2995402973 cites W2040151959 @default.
• W2995402973 cites W2044495648 @default.
• W2995402973 cites W2055881608 @default.
• W2995402973 cites W2057652593 @default.
• W2995402973 cites W2068932017 @default.
• W2995402973 cites W2085261163 @default.
• W2995402973 cites W2096769282 @default.
• W2995402973 cites W2097464861 @default.
• W2995402973 cites W2106855677 @default.
• W2995402973 cites W2112523116 @default.
• W2995402973 cites W2113153354 @default.
• W2995402973 cites W2135581618 @default.
• W2995402973 cites W2138478562 @default.
• W2995402973 cites W2147214095 @default.
• W2995402973 cites W2149309843 @default.
• W2995402973 cites W2185334756 @default.
• W2995402973 cites W2257575442 @default.
• W2995402973 cites W2277322264 @default.
• W2995402973 cites W2295893341 @default.
• W2995402973 cites W2302501749 @default.
• W2995402973 cites W2462528498 @default.
• W2995402973 cites W2512275115 @default.
• W2995402973 cites W2554180340 @default.
• W2995402973 cites W2560390311 @default.
• W2995402973 cites W2597856736 @default.
• W2995402973 cites W2604622795 @default.
• W2995402973 cites W2619713135 @default.
• W2995402973 cites W2626123383 @default.
• W2995402973 cites W2735452220 @default.
• W2995402973 cites W2741507519 @default.
• W2995402973 cites W2765745983 @default.
• W2995402973 cites W2790533686 @default.
• W2995402973 cites W2791206187 @default.
• W2995402973 cites W2807738603 @default.
• W2995402973 cites W2810484399 @default.
• W2995402973 cites W2887607675 @default.
• W2995402973 cites W2889270477 @default.
• W2995402973 cites W2890381550 @default.
• W2995402973 cites W2895187784 @default.
• W2995402973 cites W2899586783 @default.
• W2995402973 cites W2917207851 @default.
• W2995402973 cites W2920219163 @default.
• W2995402973 cites W2940558238 @default.
• W2995402973 cites W2949129058 @default.
• W2995402973 cites W2952157594 @default.
• W2995402973 cites W2952768760 @default.
• W2995402973 cites W2964307052 @default.
• W2995402973 cites W2995402973 @default.
• W2995402973 cites W3136918052 @default.
• W2995402973 cites W424561746 @default.
• W2995402973 cites W4249759701 @default.
• W2995402973 cites W646916936 @default.
• W2995402973 doi "https://doi.org/10.1093/gigascience/giz143" @default.
• W2995402973 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/6901077" @default.
• W2995402973 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/31816088" @default.
• W2995402973 hasPublicationYear "2019" @default.
• W2995402973 type Work @default.
• W2995402973 sameAs 2995402973 @default.
• W2995402973 citedByCount "16" @default.
• W2995402973 countsByYear W29954029732019 @default.
• W2995402973 countsByYear W29954029732020 @default.
• W2995402973 countsByYear W29954029732021 @default.
• W2995402973 countsByYear W29954029732022 @default.
• W2995402973 countsByYear W29954029732023 @default.
• W2995402973 crossrefType "journal-article" @default.
• W2995402973 hasAuthorship W2995402973A5006559585 @default.
• W2995402973 hasAuthorship W2995402973A5010762716 @default.
• W2995402973 hasAuthorship W2995402973A5022648989 @default.
• W2995402973 hasAuthorship W2995402973A5046946899 @default.
• W2995402973 hasAuthorship W2995402973A5050843400 @default.
• W2995402973 hasAuthorship W2995402973A5059435558 @default.
• W2995402973 hasAuthorship W2995402973A5062987908 @default.
• W2995402973 hasAuthorship W2995402973A5065703260 @default.
• W2995402973 hasAuthorship W2995402973A5069724515 @default.
• W2995402973 hasAuthorship W2995402973A5074537923 @default.
• W2995402973 hasBestOaLocation W29954029731 @default.
• W2995402973 hasConcept C124101348 @default.
• W2995402973 hasConcept C154945302 @default.
• W2995402973 hasConcept C162356407 @default.
• W2995402973 hasConcept C185592680 @default.

• next