FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3006543949> ?p ?o ?g. }

• W3006543949 endingPage "1935" @default.
• W3006543949 startingPage "1924" @default.
• W3006543949 abstract "Phosphorylation is one of the most abundant types of post-translational modifications of intrinsically disordered proteins (IDPs). This study examines the conformational changes in the 15-residue-long N-terminal fragment of the IDP statherin upon phosphorylation, using computer simulations with two different force fields: AMBER ff99SB-ILDN and CHARMM36m. The results from the simulations are compared with experimental small-angle X-ray scattering (SAXS) and circular dichroism data. In the unphosphorylated state, the two force fields are in excellent agreement regarding global structural properties such as size and shape. However, they exhibit some differences in the extent and type of the secondary structure. In the phosphorylated state, neither of the force fields performs well compared to the experimental data. Both force fields show a compaction of the peptide upon phosphorylation, greater than what is seen in SAXS experiments, although they differ in the local structure. While the CHARMM force field increases the fraction of bends in the peptide as a response to strong interactions between the phosphorylated residues and arginines, the AMBER force field shows an increase of the helical content in the N-terminal part of the peptide, where the phosphorylated residues reside, in better agreement with circular dichroism results." @default.
• W3006543949 created "2020-02-24" @default.
• W3006543949 creator A5009820023 @default.
• W3006543949 creator A5029272165 @default.
• W3006543949 date "2020-02-12" @default.
• W3006543949 modified "2023-10-12" @default.
• W3006543949 title "Phosphorylation of a Disordered Peptide—Structural Effects and Force Field Inconsistencies" @default.
• W3006543949 cites W1031578623 @default.
• W3006543949 cites W1558935335 @default.
• W3006543949 cites W1588979652 @default.
• W3006543949 cites W1911670820 @default.
• W3006543949 cites W1966078827 @default.
• W3006543949 cites W1966510662 @default.
• W3006543949 cites W1968790827 @default.
• W3006543949 cites W1969765360 @default.
• W3006543949 cites W1970103851 @default.
• W3006543949 cites W1975915682 @default.
• W3006543949 cites W1980516919 @default.
• W3006543949 cites W1981021420 @default.
• W3006543949 cites W1991820295 @default.
• W3006543949 cites W1995286508 @default.
• W3006543949 cites W2008708467 @default.
• W3006543949 cites W2011485908 @default.
• W3006543949 cites W2021787003 @default.
• W3006543949 cites W2026812285 @default.
• W3006543949 cites W2027136656 @default.
• W3006543949 cites W2027408247 @default.
• W3006543949 cites W2028046413 @default.
• W3006543949 cites W2029667189 @default.
• W3006543949 cites W2030776726 @default.
• W3006543949 cites W2031123956 @default.
• W3006543949 cites W2043738362 @default.
• W3006543949 cites W2048054661 @default.
• W3006543949 cites W2051283118 @default.
• W3006543949 cites W2052824226 @default.
• W3006543949 cites W2057477511 @default.
• W3006543949 cites W2058943073 @default.
• W3006543949 cites W2061486555 @default.
• W3006543949 cites W2066088601 @default.
• W3006543949 cites W2067174909 @default.
• W3006543949 cites W2069123478 @default.
• W3006543949 cites W2073745520 @default.
• W3006543949 cites W2077579097 @default.
• W3006543949 cites W2077873773 @default.
• W3006543949 cites W2081693079 @default.
• W3006543949 cites W2088103530 @default.
• W3006543949 cites W2102025585 @default.
• W3006543949 cites W2105388112 @default.
• W3006543949 cites W2128572087 @default.
• W3006543949 cites W2141920771 @default.
• W3006543949 cites W2144288821 @default.
• W3006543949 cites W2147988069 @default.
• W3006543949 cites W2149472608 @default.
• W3006543949 cites W2160544821 @default.
• W3006543949 cites W2161605421 @default.
• W3006543949 cites W2228908543 @default.
• W3006543949 cites W2234602429 @default.
• W3006543949 cites W2283515832 @default.
• W3006543949 cites W2312531223 @default.
• W3006543949 cites W2327000477 @default.
• W3006543949 cites W2328467898 @default.
• W3006543949 cites W2416486977 @default.
• W3006543949 cites W2555870966 @default.
• W3006543949 cites W2561110386 @default.
• W3006543949 cites W2591337760 @default.
• W3006543949 cites W2608361507 @default.
• W3006543949 cites W2616904618 @default.
• W3006543949 cites W2707646777 @default.
• W3006543949 cites W2808618567 @default.
• W3006543949 cites W2901951531 @default.
• W3006543949 cites W2937303242 @default.
• W3006543949 cites W2938158918 @default.
• W3006543949 cites W2939835259 @default.
• W3006543949 cites W4210968583 @default.
• W3006543949 doi "https://doi.org/10.1021/acs.jctc.9b01190" @default.
• W3006543949 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/32050065" @default.
• W3006543949 hasPublicationYear "2020" @default.
• W3006543949 type Work @default.
• W3006543949 sameAs 3006543949 @default.
• W3006543949 citedByCount "16" @default.
• W3006543949 countsByYear W30065439492020 @default.
• W3006543949 countsByYear W30065439492021 @default.
• W3006543949 countsByYear W30065439492022 @default.
• W3006543949 countsByYear W30065439492023 @default.
• W3006543949 crossrefType "journal-article" @default.
• W3006543949 hasAuthorship W3006543949A5009820023 @default.
• W3006543949 hasAuthorship W3006543949A5029272165 @default.
• W3006543949 hasBestOaLocation W30065439491 @default.
• W3006543949 hasConcept C10803110 @default.
• W3006543949 hasConcept C11960822 @default.
• W3006543949 hasConcept C120665830 @default.
• W3006543949 hasConcept C121332964 @default.
• W3006543949 hasConcept C12554922 @default.
• W3006543949 hasConcept C131888329 @default.
• W3006543949 hasConcept C133571119 @default.
• W3006543949 hasConcept C147597530 @default.
• W3006543949 hasConcept C159467904 @default.
• W3006543949 hasConcept C185592680 @default.

• next