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• W3028007077 abstract "Abstract Sophisticated analysis and simplified visualization are crucial for understanding complicated structures of biomacromolecules. DSSR (Dissecting the Spatial Structure of RNA) is an integrated computational tool that has streamlined the analysis and annotation of 3D nucleic acid structures. The program creates schematic block representations in diverse styles that can be seamlessly integrated into PyMOL and complement its other popular visualization options. In addition to portraying individual base blocks, DSSR can draw Watson-Crick pairs as long blocks and highlight the minor-groove edges. Notably, DSSR can dramatically simplify the depiction of G-quadruplexes by automatically detecting G-tetrads and treating them as large square blocks. The DSSR-enabled innovative schematics with PyMOL are aesthetically pleasing and highly informative: the base identity, pairing geometry, stacking interactions, double-helical stems, and G-quadruplexes are immediately obvious. These features can be accessed via four interfaces: the command-line interface, the DSSR plugin for PyMOL, the web application, and the web application programming interface. The supplemental PDF serves as a practical guide, with complete and reproducible examples. Thus, even beginners or occasional users can get started quickly, especially via the web application at http://skmatic.x3dna.org." @default.
• W3028007077 created "2020-05-29" @default.
• W3028007077 creator A5087837815 @default.
• W3028007077 date "2020-05-22" @default.
• W3028007077 modified "2023-09-25" @default.
• W3028007077 title "DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL" @default.
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• W3028007077 doi "https://doi.org/10.1093/nar/gkaa426" @default.
• W3028007077 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7367123" @default.
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