FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3033786862> ?p ?o ?g. }

• W3033786862 abstract "Abstract Background Cultivated rice consists of two subspecies, Indica and Japonica , that exhibit well-characterized differences at the morphological and genetic levels. However, the differences between these subspecies at the transcriptome level remains largely unexamined. Here, we provide a comprehensive characterization of transcriptome divergence and cis-regulatory variation within rice using transcriptome data from 91 accessions from a rice diversity panel (RDP1). Results The transcriptomes of the two subspecies of rice are highly divergent. Japonica have significantly lower expression and genetic diversity relative to Indica , which is likely a consequence of a population bottleneck during Japonica domestication. We leveraged high-density genotypic data and transcript levels to identify cis-regulatory variants that may explain the genetic divergence between the subspecies. We identified significantly more eQTL that were specific to the Indica subspecies compared to Japonica , suggesting that the observed differences in expression and genetic variability also extends to cis-regulatory variation. Conclusions Using RNA sequencing data for 91diverse rice accessions and high-density genotypic data, we show that the two species are highly divergent with respect to gene expression levels, as well as the genetic regulation of expression. The data generated by this study provide, to date, the largest collection of genome-wide transcriptional levels for rice, and provides a community resource to accelerate functional genomic studies in rice." @default.
• W3033786862 created "2020-06-12" @default.
• W3033786862 creator A5020576078 @default.
• W3033786862 creator A5031106290 @default.
• W3033786862 creator A5039697810 @default.
• W3033786862 creator A5059620664 @default.
• W3033786862 creator A5079736425 @default.
• W3033786862 creator A5084791872 @default.
• W3033786862 date "2020-06-08" @default.
• W3033786862 modified "2023-10-17" @default.
• W3033786862 title "Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa)" @default.
• W3033786862 cites W1710129948 @default.
• W3033786862 cites W1951724000 @default.
• W3033786862 cites W1973413549 @default.
• W3033786862 cites W1976818141 @default.
• W3033786862 cites W1985336821 @default.
• W3033786862 cites W1985515653 @default.
• W3033786862 cites W1989037349 @default.
• W3033786862 cites W1996753124 @default.
• W3033786862 cites W2006066143 @default.
• W3033786862 cites W2009949456 @default.
• W3033786862 cites W2017586115 @default.
• W3033786862 cites W2019232525 @default.
• W3033786862 cites W2029579605 @default.
• W3033786862 cites W2038279375 @default.
• W3033786862 cites W2043116503 @default.
• W3033786862 cites W2045791565 @default.
• W3033786862 cites W2062809207 @default.
• W3033786862 cites W2067715889 @default.
• W3033786862 cites W2071265362 @default.
• W3033786862 cites W2075388548 @default.
• W3033786862 cites W2089647411 @default.
• W3033786862 cites W2096657663 @default.
• W3033786862 cites W2097065948 @default.
• W3033786862 cites W2098126593 @default.
• W3033786862 cites W2100202460 @default.
• W3033786862 cites W2103950435 @default.
• W3033786862 cites W2104745995 @default.
• W3033786862 cites W2108137105 @default.
• W3033786862 cites W2110065044 @default.
• W3033786862 cites W2124942223 @default.
• W3033786862 cites W2127367029 @default.
• W3033786862 cites W2131271579 @default.
• W3033786862 cites W2134526812 @default.
• W3033786862 cites W2148710028 @default.
• W3033786862 cites W2149992227 @default.
• W3033786862 cites W2150457970 @default.
• W3033786862 cites W2151287710 @default.
• W3033786862 cites W2156622081 @default.
• W3033786862 cites W2168154998 @default.
• W3033786862 cites W2171863224 @default.
• W3033786862 cites W2179438025 @default.
• W3033786862 cites W2313876830 @default.
• W3033786862 cites W2319282881 @default.
• W3033786862 cites W2336973098 @default.
• W3033786862 cites W2395685942 @default.
• W3033786862 cites W2482092413 @default.
• W3033786862 cites W2558561667 @default.
• W3033786862 cites W2560165052 @default.
• W3033786862 cites W2777639606 @default.
• W3033786862 cites W2782974471 @default.
• W3033786862 cites W2793913920 @default.
• W3033786862 cites W2800434159 @default.
• W3033786862 cites W4235874578 @default.
• W3033786862 doi "https://doi.org/10.1186/s12864-020-06786-6" @default.
• W3033786862 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7278148" @default.
• W3033786862 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/32513103" @default.
• W3033786862 hasPublicationYear "2020" @default.
• W3033786862 type Work @default.
• W3033786862 sameAs 3033786862 @default.
• W3033786862 citedByCount "13" @default.
• W3033786862 countsByYear W30337868622020 @default.
• W3033786862 countsByYear W30337868622021 @default.
• W3033786862 countsByYear W30337868622022 @default.
• W3033786862 countsByYear W30337868622023 @default.
• W3033786862 crossrefType "journal-article" @default.
• W3033786862 hasAuthorship W3033786862A5020576078 @default.
• W3033786862 hasAuthorship W3033786862A5031106290 @default.
• W3033786862 hasAuthorship W3033786862A5039697810 @default.
• W3033786862 hasAuthorship W3033786862A5059620664 @default.
• W3033786862 hasAuthorship W3033786862A5079736425 @default.
• W3033786862 hasAuthorship W3033786862A5084791872 @default.
• W3033786862 hasBestOaLocation W30337868621 @default.
• W3033786862 hasConcept C104317684 @default.
• W3033786862 hasConcept C119054055 @default.
• W3033786862 hasConcept C134387633 @default.
• W3033786862 hasConcept C135763542 @default.
• W3033786862 hasConcept C141231307 @default.
• W3033786862 hasConcept C144024400 @default.
• W3033786862 hasConcept C149923435 @default.
• W3033786862 hasConcept C150194340 @default.
• W3033786862 hasConcept C153209595 @default.
• W3033786862 hasConcept C162317418 @default.
• W3033786862 hasConcept C17966761 @default.
• W3033786862 hasConcept C2778543611 @default.
• W3033786862 hasConcept C2779409272 @default.
• W3033786862 hasConcept C2908647359 @default.
• W3033786862 hasConcept C54355233 @default.
• W3033786862 hasConcept C59822182 @default.
• W3033786862 hasConcept C68873052 @default.

• next