Matches in SemOpenAlex for { <https://semopenalex.org/work/W3036907111> ?p ?o ?g. }
Showing items 1 to 92 of
92
with 100 items per page.
- W3036907111 abstract "Genomics is transforming medicine from reactive to personalized, predictive, preventive and participatory (P4). The massive amount of data produced by genomics is a major challenge as it requires extensive computational capabilities, consuming large amounts of energy. A crucial prerequisite for computational genomics is genome assembly but the existing mapping tools used are predominantly software based, optimized for homogeneous high-performance systems. In this paper, we propose an OpenCL based REad maPper for heterogeneoUs sysTEms (REPUTE), which can use diverse and parallel compute and storage devices effectively. Core to this tool are dynamic programming based filtration and verification kernel to map the reads on multiple devices, concurrently. We show hardware/software co-design and implementations of REPUTE across different platforms, and compare it with state-of-the-art mappers. We demonstrate the performance of mappers on two systems: 1) Intel CPU + 2 x Nvidia GPUs; 2) HiKey970 embedded SoC with ARM Cortex-A73/A53 cores. The results show that REPUTE outperforms other read mappers in most cases producing up to 13x speedup with better or comparable accuracy. We also demonstrate that the embedded implementation can achieve up to 27x energy savings, enabling low-cost genomics." @default.
- W3036907111 created "2020-06-25" @default.
- W3036907111 creator A5029446985 @default.
- W3036907111 creator A5044085104 @default.
- W3036907111 creator A5045339285 @default.
- W3036907111 creator A5061841041 @default.
- W3036907111 creator A5077777787 @default.
- W3036907111 date "2020-03-01" @default.
- W3036907111 modified "2023-10-18" @default.
- W3036907111 title "REPUTE: An OpenCL based Read Mapping Tool for Embedded Genomics" @default.
- W3036907111 cites W2025648894 @default.
- W3036907111 cites W2034798008 @default.
- W3036907111 cites W2100751585 @default.
- W3036907111 cites W2104589727 @default.
- W3036907111 cites W2104846587 @default.
- W3036907111 cites W2128016314 @default.
- W3036907111 cites W2133687564 @default.
- W3036907111 cites W2142759233 @default.
- W3036907111 cites W2156715753 @default.
- W3036907111 cites W2158322625 @default.
- W3036907111 cites W2158874082 @default.
- W3036907111 cites W2170551349 @default.
- W3036907111 cites W2790281675 @default.
- W3036907111 cites W2976324826 @default.
- W3036907111 cites W794840634 @default.
- W3036907111 doi "https://doi.org/10.23919/date48585.2020.9116238" @default.
- W3036907111 hasPublicationYear "2020" @default.
- W3036907111 type Work @default.
- W3036907111 sameAs 3036907111 @default.
- W3036907111 citedByCount "1" @default.
- W3036907111 countsByYear W30369071112021 @default.
- W3036907111 crossrefType "proceedings-article" @default.
- W3036907111 hasAuthorship W3036907111A5029446985 @default.
- W3036907111 hasAuthorship W3036907111A5044085104 @default.
- W3036907111 hasAuthorship W3036907111A5045339285 @default.
- W3036907111 hasAuthorship W3036907111A5061841041 @default.
- W3036907111 hasAuthorship W3036907111A5077777787 @default.
- W3036907111 hasConcept C104317684 @default.
- W3036907111 hasConcept C111919701 @default.
- W3036907111 hasConcept C114614502 @default.
- W3036907111 hasConcept C118524514 @default.
- W3036907111 hasConcept C141231307 @default.
- W3036907111 hasConcept C150552126 @default.
- W3036907111 hasConcept C172430144 @default.
- W3036907111 hasConcept C173608175 @default.
- W3036907111 hasConcept C185592680 @default.
- W3036907111 hasConcept C189206191 @default.
- W3036907111 hasConcept C199360897 @default.
- W3036907111 hasConcept C26713055 @default.
- W3036907111 hasConcept C2777904410 @default.
- W3036907111 hasConcept C33923547 @default.
- W3036907111 hasConcept C41008148 @default.
- W3036907111 hasConcept C55493867 @default.
- W3036907111 hasConcept C68339613 @default.
- W3036907111 hasConcept C74193536 @default.
- W3036907111 hasConcept C78766204 @default.
- W3036907111 hasConceptScore W3036907111C104317684 @default.
- W3036907111 hasConceptScore W3036907111C111919701 @default.
- W3036907111 hasConceptScore W3036907111C114614502 @default.
- W3036907111 hasConceptScore W3036907111C118524514 @default.
- W3036907111 hasConceptScore W3036907111C141231307 @default.
- W3036907111 hasConceptScore W3036907111C150552126 @default.
- W3036907111 hasConceptScore W3036907111C172430144 @default.
- W3036907111 hasConceptScore W3036907111C173608175 @default.
- W3036907111 hasConceptScore W3036907111C185592680 @default.
- W3036907111 hasConceptScore W3036907111C189206191 @default.
- W3036907111 hasConceptScore W3036907111C199360897 @default.
- W3036907111 hasConceptScore W3036907111C26713055 @default.
- W3036907111 hasConceptScore W3036907111C2777904410 @default.
- W3036907111 hasConceptScore W3036907111C33923547 @default.
- W3036907111 hasConceptScore W3036907111C41008148 @default.
- W3036907111 hasConceptScore W3036907111C55493867 @default.
- W3036907111 hasConceptScore W3036907111C68339613 @default.
- W3036907111 hasConceptScore W3036907111C74193536 @default.
- W3036907111 hasConceptScore W3036907111C78766204 @default.
- W3036907111 hasLocation W30369071111 @default.
- W3036907111 hasOpenAccess W3036907111 @default.
- W3036907111 hasPrimaryLocation W30369071111 @default.
- W3036907111 hasRelatedWork W11377794 @default.
- W3036907111 hasRelatedWork W1423516 @default.
- W3036907111 hasRelatedWork W1700581 @default.
- W3036907111 hasRelatedWork W320786 @default.
- W3036907111 hasRelatedWork W4517415 @default.
- W3036907111 hasRelatedWork W619728 @default.
- W3036907111 hasRelatedWork W7511652 @default.
- W3036907111 hasRelatedWork W9395724 @default.
- W3036907111 hasRelatedWork W9440374 @default.
- W3036907111 hasRelatedWork W9717478 @default.
- W3036907111 isParatext "false" @default.
- W3036907111 isRetracted "false" @default.
- W3036907111 magId "3036907111" @default.
- W3036907111 workType "article" @default.