FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3046469421> ?p ?o ?g. }

• W3046469421 abstract "Sweet cherry (Prunus avium) is an economically significant fruit species in the genus Prunus. However, in contrast to other important fruit trees in this genus, only one draft genome assembly is available for sweet cherry, which was assembled using only Illumina short-read sequences. The incompleteness and low quality of the current sweet cherry draft genome limit its use in genetic and genomic studies. A high-quality chromosome-scale sweet cherry reference genome assembly is therefore needed. A total of 65.05 Gb of Oxford Nanopore long reads and 46.24 Gb of Illumina short reads were generated, representing ~190x and 136x coverage, respectively, of the sweet cherry genome. The final de novo assembly resulted in a phased haplotype assembly of 344.29 Mb with a contig N50 of 3.25 Mb. Hi-C scaffolding of the genome resulted in eight pseudochromosomes containing 99.59% of the bases in the assembled genome. Genome annotation revealed that more than half of the genome (59.40%) was composed of repetitive sequences, and 40,338 protein-coding genes were predicted, 75.40% of which were functionally annotated. With the chromosome-scale assembly, we revealed that gene duplication events contributed to the expansion of gene families for salicylic acid/jasmonic acid carboxyl methyltransferase and ankyrin repeat-containing proteins in the genome of sweet cherry. Four auxin-responsive genes (two GH3s and two SAURs) were induced in the late stage of fruit development, indicating that auxin is crucial for the sweet cherry ripening process. In addition, 772 resistance genes were identified and functionally predicted in the sweet cherry genome. The high-quality genome assembly of sweet cherry obtained in this study will provide valuable genomic resources for sweet cherry improvement and molecular breeding." @default.
• W3046469421 created "2020-08-07" @default.
• W3046469421 creator A5007998816 @default.
• W3046469421 creator A5013225038 @default.
• W3046469421 creator A5019412794 @default.
• W3046469421 creator A5021298676 @default.
• W3046469421 creator A5021355100 @default.
• W3046469421 creator A5022942698 @default.
• W3046469421 creator A5028686237 @default.
• W3046469421 creator A5030719289 @default.
• W3046469421 creator A5033796591 @default.
• W3046469421 creator A5033872072 @default.
• W3046469421 creator A5048805901 @default.
• W3046469421 creator A5072036068 @default.
• W3046469421 creator A5076264939 @default.
• W3046469421 creator A5088997305 @default.
• W3046469421 date "2020-08-01" @default.
• W3046469421 modified "2023-10-18" @default.
• W3046469421 title "Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing" @default.
• W3046469421 cites W1484347389 @default.
• W3046469421 cites W1503021248 @default.
• W3046469421 cites W1527927437 @default.
• W3046469421 cites W173101857 @default.
• W3046469421 cites W1964436754 @default.
• W3046469421 cites W1971147414 @default.
• W3046469421 cites W2019912702 @default.
• W3046469421 cites W2027847170 @default.
• W3046469421 cites W2045843097 @default.
• W3046469421 cites W2060531604 @default.
• W3046469421 cites W2061006600 @default.
• W3046469421 cites W2065589216 @default.
• W3046469421 cites W2085187145 @default.
• W3046469421 cites W2096128575 @default.
• W3046469421 cites W2101291993 @default.
• W3046469421 cites W2106208020 @default.
• W3046469421 cites W2107751776 @default.
• W3046469421 cites W2110155683 @default.
• W3046469421 cites W2121840477 @default.
• W3046469421 cites W2122559203 @default.
• W3046469421 cites W2130530163 @default.
• W3046469421 cites W2131848047 @default.
• W3046469421 cites W2133579817 @default.
• W3046469421 cites W2141152740 @default.
• W3046469421 cites W2141165178 @default.
• W3046469421 cites W2145876138 @default.
• W3046469421 cites W2148592495 @default.
• W3046469421 cites W2148639376 @default.
• W3046469421 cites W2156935935 @default.
• W3046469421 cites W2158804744 @default.
• W3046469421 cites W2159038577 @default.
• W3046469421 cites W2169737822 @default.
• W3046469421 cites W2226299262 @default.
• W3046469421 cites W2253566302 @default.
• W3046469421 cites W2396077153 @default.
• W3046469421 cites W2481029670 @default.
• W3046469421 cites W2486939867 @default.
• W3046469421 cites W2591790584 @default.
• W3046469421 cites W2618861018 @default.
• W3046469421 cites W2743169286 @default.
• W3046469421 cites W2769449671 @default.
• W3046469421 cites W2804476515 @default.
• W3046469421 cites W2807674901 @default.
• W3046469421 cites W2885582175 @default.
• W3046469421 cites W2890434000 @default.
• W3046469421 cites W2892198432 @default.
• W3046469421 cites W2898402099 @default.
• W3046469421 cites W2900359059 @default.
• W3046469421 cites W2901620691 @default.
• W3046469421 cites W2903125175 @default.
• W3046469421 cites W2904633117 @default.
• W3046469421 cites W2907436510 @default.
• W3046469421 cites W2912990441 @default.
• W3046469421 cites W2932879461 @default.
• W3046469421 cites W2938875479 @default.
• W3046469421 cites W2941072767 @default.
• W3046469421 cites W2949086752 @default.
• W3046469421 cites W2949435646 @default.
• W3046469421 cites W2949841808 @default.
• W3046469421 cites W2950354111 @default.
• W3046469421 cites W2951257985 @default.
• W3046469421 cites W2951351160 @default.
• W3046469421 cites W2963303569 @default.
• W3046469421 cites W2963905373 @default.
• W3046469421 cites W2965879979 @default.
• W3046469421 cites W2983796407 @default.
• W3046469421 cites W2988396470 @default.
• W3046469421 cites W2990895847 @default.
• W3046469421 cites W3004375074 @default.
• W3046469421 cites W3131180964 @default.
• W3046469421 cites W3136918052 @default.
• W3046469421 cites W3215840593 @default.
• W3046469421 doi "https://doi.org/10.1038/s41438-020-00343-8" @default.
• W3046469421 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7395734" @default.
• W3046469421 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34333529" @default.
• W3046469421 hasPublicationYear "2020" @default.
• W3046469421 type Work @default.
• W3046469421 sameAs 3046469421 @default.
• W3046469421 citedByCount "33" @default.
• W3046469421 countsByYear W30464694212020 @default.
• W3046469421 countsByYear W30464694212021 @default.

• next