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- W3047014782 endingPage "892" @default.
- W3047014782 startingPage "892" @default.
- W3047014782 abstract "Genome wide association studies (GWAS) are a well established methodology to identify genomic variants and genes that are responsible for traits of interest in all branches of the life sciences. Despite the long time this methodology has had to mature the reliable detection of genotype–phenotype associations is still a challenge for many quantitative traits mainly because of the large number of genomic loci with weak individual effects on the trait under investigation. Thus, it can be hypothesized that many genomic variants that have a small, however real, effect remain unnoticed in many GWAS approaches. Here, we propose a two-step procedure to address this problem. In a first step, cubic splines are fitted to the test statistic values and genomic regions with spline-peaks that are higher than expected by chance are considered as quantitative trait loci (QTL). Then the SNPs in these QTLs are prioritized with respect to the strength of their association with the phenotype using a Random Forests approach. As a case study, we apply our procedure to real data sets and find trustworthy numbers of, partially novel, genomic variants and genes involved in various egg quality traits." @default.
- W3047014782 created "2020-08-10" @default.
- W3047014782 creator A5000363495 @default.
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- W3047014782 creator A5032455109 @default.
- W3047014782 creator A5085199270 @default.
- W3047014782 date "2020-08-05" @default.
- W3047014782 modified "2023-09-26" @default.
- W3047014782 title "Combining Random Forests and a Signal Detection Method Leads to the Robust Detection of Genotype-Phenotype Associations" @default.
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- W3047014782 doi "https://doi.org/10.3390/genes11080892" @default.
- W3047014782 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7465705" @default.
- W3047014782 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/32764260" @default.
- W3047014782 hasPublicationYear "2020" @default.
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