FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3048489096> ?p ?o ?g. }

• W3048489096 abstract "Abstract Motivation Sequence alignment is one of the first steps in many modern genomic analyses, such as variant detection, transcript abundance estimation and metagenomic profiling. Unfortunately, it is often a computationally expensive procedure. As the quantity of data and wealth of different assays and applications continue to grow, the need for accurate and fast alignment tools persists. Results In this paper, we introduce PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly-sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast STAR aligner, PuffAligner requires considerably less memory to construct its index and align reads. PuffAligner strikes a desirable balance with respect to the time, space, and accuracy tradeoffs made by different alignment tools, and provides a promising foundation on which to test new alignment ideas over large collections of sequences. Availability PuffAligner is a free and open-source software. It is implemented in C++14 and can be obtained from https://github.com/COMBINE-lab/pufferfish/tree/cigar-strings" @default.
• W3048489096 created "2020-08-18" @default.
• W3048489096 creator A5014584023 @default.
• W3048489096 creator A5023979383 @default.
• W3048489096 creator A5028361756 @default.
• W3048489096 date "2020-08-12" @default.
• W3048489096 modified "2023-09-27" @default.
• W3048489096 title "Puffaligner: An Efficient and Accurate Aligner Based on the Pufferfish Index" @default.
• W3048489096 cites W1813440684 @default.
• W3048489096 cites W1999410197 @default.
• W3048489096 cites W1999574084 @default.
• W3048489096 cites W2000586119 @default.
• W3048489096 cites W2010361633 @default.
• W3048489096 cites W2018838463 @default.
• W3048489096 cites W2019399596 @default.
• W3048489096 cites W2102278945 @default.
• W3048489096 cites W2103441770 @default.
• W3048489096 cites W2104422209 @default.
• W3048489096 cites W2104549677 @default.
• W3048489096 cites W2110905563 @default.
• W3048489096 cites W2112876600 @default.
• W3048489096 cites W2139747296 @default.
• W3048489096 cites W2140154634 @default.
• W3048489096 cites W2142678031 @default.
• W3048489096 cites W2169456326 @default.
• W3048489096 cites W2170551349 @default.
• W3048489096 cites W2323326409 @default.
• W3048489096 cites W2345658906 @default.
• W3048489096 cites W2474973645 @default.
• W3048489096 cites W2592811885 @default.
• W3048489096 cites W2613660619 @default.
• W3048489096 cites W2759261668 @default.
• W3048489096 cites W2789843538 @default.
• W3048489096 cites W2809649683 @default.
• W3048489096 cites W2888433179 @default.
• W3048489096 cites W2891275623 @default.
• W3048489096 cites W2898598946 @default.
• W3048489096 cites W2905891590 @default.
• W3048489096 cites W2948240282 @default.
• W3048489096 cites W2949087252 @default.
• W3048489096 cites W2951912016 @default.
• W3048489096 cites W2952379095 @default.
• W3048489096 cites W2952609831 @default.
• W3048489096 cites W2952615074 @default.
• W3048489096 cites W2953174564 @default.
• W3048489096 cites W2964849163 @default.
• W3048489096 cites W3003217347 @default.
• W3048489096 cites W3010020071 @default.
• W3048489096 cites W3010466793 @default.
• W3048489096 cites W4253153605 @default.
• W3048489096 doi "https://doi.org/10.1101/2020.08.11.246892" @default.
• W3048489096 hasPublicationYear "2020" @default.
• W3048489096 type Work @default.
• W3048489096 sameAs 3048489096 @default.
• W3048489096 citedByCount "2" @default.
• W3048489096 countsByYear W30484890962020 @default.
• W3048489096 countsByYear W30484890962022 @default.
• W3048489096 crossrefType "posted-content" @default.
• W3048489096 hasAuthorship W3048489096A5014584023 @default.
• W3048489096 hasAuthorship W3048489096A5023979383 @default.
• W3048489096 hasAuthorship W3048489096A5028361756 @default.
• W3048489096 hasBestOaLocation W30484890961 @default.
• W3048489096 hasConcept C104317684 @default.
• W3048489096 hasConcept C11413529 @default.
• W3048489096 hasConcept C124101348 @default.
• W3048489096 hasConcept C136764020 @default.
• W3048489096 hasConcept C15151743 @default.
• W3048489096 hasConcept C187191949 @default.
• W3048489096 hasConcept C199360897 @default.
• W3048489096 hasConcept C2777382242 @default.
• W3048489096 hasConcept C2777904410 @default.
• W3048489096 hasConcept C2780801425 @default.
• W3048489096 hasConcept C41008148 @default.
• W3048489096 hasConcept C55493867 @default.
• W3048489096 hasConcept C80444323 @default.
• W3048489096 hasConcept C86803240 @default.
• W3048489096 hasConceptScore W3048489096C104317684 @default.
• W3048489096 hasConceptScore W3048489096C11413529 @default.
• W3048489096 hasConceptScore W3048489096C124101348 @default.
• W3048489096 hasConceptScore W3048489096C136764020 @default.
• W3048489096 hasConceptScore W3048489096C15151743 @default.
• W3048489096 hasConceptScore W3048489096C187191949 @default.
• W3048489096 hasConceptScore W3048489096C199360897 @default.
• W3048489096 hasConceptScore W3048489096C2777382242 @default.
• W3048489096 hasConceptScore W3048489096C2777904410 @default.
• W3048489096 hasConceptScore W3048489096C2780801425 @default.
• W3048489096 hasConceptScore W3048489096C41008148 @default.
• W3048489096 hasConceptScore W3048489096C55493867 @default.
• W3048489096 hasConceptScore W3048489096C80444323 @default.
• W3048489096 hasConceptScore W3048489096C86803240 @default.
• W3048489096 hasLocation W30484890961 @default.
• W3048489096 hasLocation W30484890962 @default.
• W3048489096 hasOpenAccess W3048489096 @default.
• W3048489096 hasPrimaryLocation W30484890961 @default.
• W3048489096 hasRelatedWork W1602801198 @default.
• W3048489096 hasRelatedWork W2167571567 @default.
• W3048489096 hasRelatedWork W2348361596 @default.
• W3048489096 hasRelatedWork W2350287655 @default.
• W3048489096 hasRelatedWork W2351571780 @default.
• W3048489096 hasRelatedWork W2352497206 @default.

• next