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- W3084216629 startingPage "1176" @default.
- W3084216629 abstract "Soft rot caused by Pectobacterium species is a devastating plant disease poorly characterized in terms of host plant responses. In this study, changes in the transcriptome of tobacco plants after infection with Pectobacterium atrosepticum (Pba) were analyzed using RNA-Seq. To draw a comprehensive and nontrivially itemized picture of physiological events in Pba-infected plants and to reveal novel potential molecular “players” in plant–Pba interactions, an original functional gene classification was performed. The classifications present in various databases were merged, enriched by “missed” genes, and divided into subcategories. Particular changes in plant cell wall-related processes, perturbations in hormonal and other regulatory systems, and alterations in primary, secondary, and redox metabolism were elucidated in terms of gene expression. Special attention was paid to the prediction of transcription factors (TFs) involved in the disease’s development. Herewith, gene expression was analyzed within the predicted TF regulons assembled at the whole-genome level based on the presence of particular cis-regulatory elements (CREs) in gene promoters. Several TFs, whose regulons were enriched by differentially expressed genes, were considered to be potential master regulators of Pba-induced plant responses. Differential regulation of genes belonging to a particular multigene family and encoding cognate proteins was explained by the presence/absence of the particular CRE in gene promoters." @default.
- W3084216629 created "2020-09-14" @default.
- W3084216629 creator A5002310647 @default.
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- W3084216629 creator A5078222059 @default.
- W3084216629 date "2020-09-10" @default.
- W3084216629 modified "2023-10-03" @default.
- W3084216629 title "Plant Soft Rot Development and Regulation from the Viewpoint of Transcriptomic Profiling" @default.
- W3084216629 cites W1207326270 @default.
- W3084216629 cites W1549049206 @default.
- W3084216629 cites W1709815505 @default.
- W3084216629 cites W1711237433 @default.
- W3084216629 cites W1747369139 @default.
- W3084216629 cites W1915578613 @default.
- W3084216629 cites W1957571100 @default.
- W3084216629 cites W1969156695 @default.
- W3084216629 cites W1984150644 @default.
- W3084216629 cites W1986264232 @default.
- W3084216629 cites W1987188990 @default.
- W3084216629 cites W1993008382 @default.
- W3084216629 cites W1995869668 @default.
- W3084216629 cites W1996146264 @default.
- W3084216629 cites W1996960217 @default.
- W3084216629 cites W1996960274 @default.
- W3084216629 cites W1998326152 @default.
- W3084216629 cites W2002265852 @default.
- W3084216629 cites W2002421430 @default.
- W3084216629 cites W2004552758 @default.
- W3084216629 cites W2017058689 @default.
- W3084216629 cites W2024151510 @default.
- W3084216629 cites W2027317496 @default.
- W3084216629 cites W2029722933 @default.
- W3084216629 cites W2030264283 @default.
- W3084216629 cites W2040076764 @default.
- W3084216629 cites W2041895459 @default.
- W3084216629 cites W2043166298 @default.
- W3084216629 cites W2053709894 @default.
- W3084216629 cites W2060785576 @default.
- W3084216629 cites W2061674235 @default.
- W3084216629 cites W2063961981 @default.
- W3084216629 cites W2067966691 @default.
- W3084216629 cites W2071617886 @default.
- W3084216629 cites W2076416305 @default.
- W3084216629 cites W2080800113 @default.
- W3084216629 cites W2080943990 @default.
- W3084216629 cites W2084702977 @default.
- W3084216629 cites W2086812615 @default.
- W3084216629 cites W2087111038 @default.
- W3084216629 cites W2089518438 @default.
- W3084216629 cites W2096378733 @default.
- W3084216629 cites W2098911708 @default.
- W3084216629 cites W2098915977 @default.
- W3084216629 cites W2099110887 @default.
- W3084216629 cites W2101883164 @default.
- W3084216629 cites W2107536885 @default.
- W3084216629 cites W2109705394 @default.
- W3084216629 cites W2112907855 @default.
- W3084216629 cites W2113559899 @default.
- W3084216629 cites W2114104545 @default.
- W3084216629 cites W2116269912 @default.
- W3084216629 cites W2118672460 @default.
- W3084216629 cites W2120840252 @default.
- W3084216629 cites W2124514540 @default.
- W3084216629 cites W2124799197 @default.
- W3084216629 cites W2131033489 @default.
- W3084216629 cites W2131271579 @default.
- W3084216629 cites W2132877346 @default.
- W3084216629 cites W2135475337 @default.
- W3084216629 cites W2137247570 @default.
- W3084216629 cites W2145315588 @default.
- W3084216629 cites W2146551890 @default.
- W3084216629 cites W2149118179 @default.
- W3084216629 cites W2151345174 @default.
- W3084216629 cites W2152584107 @default.
- W3084216629 cites W2156498013 @default.
- W3084216629 cites W2160128789 @default.
- W3084216629 cites W2164879574 @default.
- W3084216629 cites W2167623350 @default.
- W3084216629 cites W2170698193 @default.
- W3084216629 cites W2174264336 @default.
- W3084216629 cites W2186201536 @default.
- W3084216629 cites W2211041547 @default.
- W3084216629 cites W2298187437 @default.
- W3084216629 cites W2300276191 @default.
- W3084216629 cites W2323326409 @default.
- W3084216629 cites W2327968038 @default.
- W3084216629 cites W2334792094 @default.
- W3084216629 cites W2354872643 @default.
- W3084216629 cites W2566050392 @default.
- W3084216629 cites W2567619102 @default.
- W3084216629 cites W2601893946 @default.
- W3084216629 cites W2620868269 @default.
- W3084216629 cites W2790631595 @default.
- W3084216629 cites W2790877551 @default.
- W3084216629 cites W2792647536 @default.