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- W3087673000 endingPage "e103" @default.
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- W3087673000 abstract "Adaptive evolution has shaped major biological processes. Finding the protein-coding genes and the sites that have been subjected to adaptation during evolutionary time is a major endeavor. However, very few methods fully automate the identification of positively selected genes, and widespread sources of genetic innovations such as gene duplication and recombination are absent from most pipelines. Here, we developed DGINN, a highly-flexible and public pipeline to Detect Genetic INNovations and adaptive evolution in protein-coding genes. DGINN automates, from a gene's sequence, all steps of the evolutionary analyses necessary to detect the aforementioned innovations, including the search for homologs in databases, assignation of orthology groups, identification of duplication and recombination events, as well as detection of positive selection using five methods to increase precision and ranking of genes when a large panel is analyzed. DGINN was validated on nineteen genes with previously-characterized evolutionary histories in primates, including some engaged in host-pathogen arms-races. Our results confirm and also expand results from the literature, including novel findings on the Guanylate-binding protein family, GBPs. This establishes DGINN as an efficient tool to automatically detect genetic innovations and adaptive evolution in diverse datasets, from the user's gene of interest to a large gene list in any species range." @default.
- W3087673000 created "2020-09-25" @default.
- W3087673000 creator A5048275896 @default.
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- W3087673000 creator A5079476145 @default.
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- W3087673000 creator A5087318985 @default.
- W3087673000 date "2020-09-17" @default.
- W3087673000 modified "2023-10-18" @default.
- W3087673000 title "DGINN, an automated and highly-flexible pipeline for the detection of genetic innovations on protein-coding genes" @default.
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- W3087673000 doi "https://doi.org/10.1093/nar/gkaa680" @default.
- W3087673000 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7544217" @default.
- W3087673000 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/32941639" @default.
- W3087673000 hasPublicationYear "2020" @default.
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