FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3089003503> ?p ?o ?g. }

• W3089003503 abstract "Eggplant (Solanum melongena L.) is an economically important vegetable crop in the Solanaceae family, with extensive diversity among landraces and close relatives. Here, we report a high-quality reference genome for the eggplant inbred line HQ-1315 (S. melongena-HQ) using a combination of Illumina, Nanopore and 10X genomics sequencing technologies and Hi-C technology for genome assembly. The assembled genome has a total size of ~1.17 Gb and 12 chromosomes, with a contig N50 of 5.26 Mb, consisting of 36,582 protein-coding genes. Repetitive sequences comprise 70.09% (811.14 Mb) of the eggplant genome, most of which are long terminal repeat (LTR) retrotransposons (65.80%), followed by long interspersed nuclear elements (LINEs, 1.54%) and DNA transposons (0.85%). The S. melongena-HQ eggplant genome carries a total of 563 accession-specific gene families containing 1009 genes. In total, 73 expanded gene families (892 genes) and 34 contraction gene families (114 genes) were functionally annotated. Comparative analysis of different eggplant genomes identified three types of variations, including single-nucleotide polymorphisms (SNPs), insertions/deletions (indels) and structural variants (SVs). Asymmetric SV accumulation was found in potential regulatory regions of protein-coding genes among the different eggplant genomes. Furthermore, we performed QTL-seq for eggplant fruit length using the S. melongena-HQ reference genome and detected a QTL interval of 71.29-78.26 Mb on chromosome E03. The gene Smechr0301963, which belongs to the SUN gene family, is predicted to be a key candidate gene for eggplant fruit length regulation. Moreover, we anchored a total of 210 linkage markers associated with 71 traits to the eggplant chromosomes and finally obtained 26 QTL hotspots. The eggplant HQ-1315 genome assembly can be accessed at http://eggplant-hq.cn. In conclusion, the eggplant genome presented herein provides a global view of genomic divergence at the whole-genome level and powerful tools for the identification of candidate genes for important traits in eggplant." @default.
• W3089003503 created "2020-10-01" @default.
• W3089003503 creator A5038004548 @default.
• W3089003503 creator A5065541374 @default.
• W3089003503 creator A5069007358 @default.
• W3089003503 creator A5071383607 @default.
• W3089003503 creator A5078255726 @default.
• W3089003503 creator A5089316970 @default.
• W3089003503 date "2020-09-21" @default.
• W3089003503 modified "2023-10-14" @default.
• W3089003503 title "A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant" @default.
• W3089003503 cites W1151089216 @default.
• W3089003503 cites W1494075612 @default.
• W3089003503 cites W1579534339 @default.
• W3089003503 cites W1984068087 @default.
• W3089003503 cites W1987084476 @default.
• W3089003503 cites W1990188370 @default.
• W3089003503 cites W1990579957 @default.
• W3089003503 cites W1993158258 @default.
• W3089003503 cites W1997405626 @default.
• W3089003503 cites W2012331775 @default.
• W3089003503 cites W2017711291 @default.
• W3089003503 cites W2020753217 @default.
• W3089003503 cites W2022472106 @default.
• W3089003503 cites W2028024776 @default.
• W3089003503 cites W2042881722 @default.
• W3089003503 cites W2053527907 @default.
• W3089003503 cites W2065085494 @default.
• W3089003503 cites W2065817684 @default.
• W3089003503 cites W2075550505 @default.
• W3089003503 cites W2082330286 @default.
• W3089003503 cites W2089800982 @default.
• W3089003503 cites W2089819022 @default.
• W3089003503 cites W2099589970 @default.
• W3089003503 cites W2103017472 @default.
• W3089003503 cites W2103441770 @default.
• W3089003503 cites W2107158607 @default.
• W3089003503 cites W2107915254 @default.
• W3089003503 cites W2108108770 @default.
• W3089003503 cites W2108234281 @default.
• W3089003503 cites W2108303454 @default.
• W3089003503 cites W2108787198 @default.
• W3089003503 cites W2110335151 @default.
• W3089003503 cites W2113280067 @default.
• W3089003503 cites W2115605381 @default.
• W3089003503 cites W2116423958 @default.
• W3089003503 cites W2118970397 @default.
• W3089003503 cites W2118970626 @default.
• W3089003503 cites W2119180969 @default.
• W3089003503 cites W2121840477 @default.
• W3089003503 cites W2121918723 @default.
• W3089003503 cites W2126419817 @default.
• W3089003503 cites W2131074700 @default.
• W3089003503 cites W2131848047 @default.
• W3089003503 cites W2132926880 @default.
• W3089003503 cites W2140455347 @default.
• W3089003503 cites W2140729960 @default.
• W3089003503 cites W2141052558 @default.
• W3089003503 cites W2141458291 @default.
• W3089003503 cites W2144268209 @default.
• W3089003503 cites W2147526198 @default.
• W3089003503 cites W2148592495 @default.
• W3089003503 cites W2149429041 @default.
• W3089003503 cites W2155628349 @default.
• W3089003503 cites W2156622081 @default.
• W3089003503 cites W2158435297 @default.
• W3089003503 cites W2158714788 @default.
• W3089003503 cites W2159881676 @default.
• W3089003503 cites W2160391145 @default.
• W3089003503 cites W2165356360 @default.
• W3089003503 cites W2167638767 @default.
• W3089003503 cites W2289509647 @default.
• W3089003503 cites W2298921360 @default.
• W3089003503 cites W2345920351 @default.
• W3089003503 cites W2346290259 @default.
• W3089003503 cites W2403944210 @default.
• W3089003503 cites W2427302822 @default.
• W3089003503 cites W2470970107 @default.
• W3089003503 cites W2547405129 @default.
• W3089003503 cites W2570528167 @default.
• W3089003503 cites W2575750030 @default.
• W3089003503 cites W2590583044 @default.
• W3089003503 cites W2607205892 @default.
• W3089003503 cites W2610308012 @default.
• W3089003503 cites W2763726643 @default.
• W3089003503 cites W2775643473 @default.
• W3089003503 cites W2784145308 @default.
• W3089003503 cites W2943408303 @default.
• W3089003503 cites W2955282961 @default.
• W3089003503 cites W2968050917 @default.
• W3089003503 cites W2978309466 @default.
• W3089003503 cites W2990850150 @default.
• W3089003503 cites W2992976869 @default.
• W3089003503 cites W2998717747 @default.
• W3089003503 cites W3011974068 @default.
• W3089003503 cites W3142339852 @default.
• W3089003503 doi "https://doi.org/10.1038/s41438-020-00391-0" @default.
• W3089003503 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7506008" @default.
• W3089003503 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34545066" @default.
• W3089003503 hasPublicationYear "2020" @default.

• next