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• W3097855175 abstract "Rice ( Oryza sativa L.) is one of the most important cereal crops for one third of the world population. However, the grain quality as well as yield of rice is severely affected by various abiotic stresses. Environmental stresses affect the expression of various microRNAs (miRNAs) which in turn negatively regulate gene expression at the post-transcriptional level either by degrading the target mRNA genes or suppressing translation in plants. Plant homeo-domain (PHD) finger proteins are known to be involved in the plant response to salinity stress. In the present study, we identified 44 putative OsPHD finger genes in Oryza sativa Indica, using Ensembl Plants Database. Using computational approach, potential miRNAs that target OsPHD finger genes were identified. Out of the 44 OsPHD finger genes only three OsPHD finger genes i.e., OsPHD2, OsPHD35 and OsPHD11 , were found to be targeted by five newly identified putative miRNAs i.e., ath-miRf10010-akr, ath-miRf10110-akr, osa-miR1857–3p, osa-miRf10863-akr, and osa-miRf11806-akr. This is the first report of these five identified miRNAs on targeting PHD finger in Oryza sativa Indica. Further, expression analysis of 44 PHD finger genes under salinity was also performed using quantitative Real-Time PCR. The expression profile of 8 genes were found to be differentially regulated, among them two genes were significantly up regulated i.e., OsPHD6 and OsPHD12 . In silico protein-protein interaction analysis using STRING database showed interaction of the OsPHD finger proteins with other protein partners that are directly or indirectly involved in development and abiotic stress tolerance. • Total of 44 Plant homeo-domain (PHD) finger proteins were identified & classified into 10 groups in Oryza sativa Indica. • This is the first report showing 5 newly identified putative miRNAs targeting three OsPHD genes i.e., OsPHD2, 11 and 35. • Expression analysis of PHD finger genes showed up-regulation of the 2 genes OsPHD 6 & 12 under salinity stress treatment. • Protein-protein network of OsPHDs showed protein partners that are involved in plant growth and abiotic stress tolerance." @default.
• W3097855175 created "2020-11-09" @default.
• W3097855175 creator A5032899711 @default.
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• W3097855175 date "2020-12-01" @default.
• W3097855175 modified "2023-09-26" @default.
• W3097855175 title "Genome-wide analysis of PHD finger gene family and identification of potential miRNA and their PHD finger gene specific targets in Oryza sativa indica" @default.
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• W3097855175 doi "https://doi.org/10.1016/j.ncrna.2020.10.002" @default.
• W3097855175 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7610035" @default.
• W3097855175 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33163736" @default.
• W3097855175 hasPublicationYear "2020" @default.
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