FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3098541287> ?p ?o ?g. }

• W3098541287 abstract "Abstract Community-level data, the type generated by an increasing number of metabarcoding studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. These graph types do not convey the hierarchical structure of taxonomic classifications and are limited by the use of color for categories. As an alternative, we developed metacoder , an R package for easily parsing, manipulating, and graphing publication-ready plots of hierarchical data. Metacoder includes a dynamic and flexible function that can parse most text-based formats that contain taxonomic classifications, taxon names, taxon identifiers, or sequence identifiers. Metacoder can then subset, sample, and order this parsed data using a set of intuitive functions that take into account the hierarchical nature of the data. Finally, an extremely flexible plotting function enables quantitative representation of up to 4 arbitrary statistics simultaneously in a tree format by mapping statistics to the color and size of tree nodes and edges. Metacoder also allows exploration of barcode primer bias by integrating functions to run digital PCR. Although it has been designed for data from metabarcoding research, metacoder can easily be applied to any data that has a hierarchical component such as gene ontology or geographic location data. Our package complements currently available tools for community analysis and is provided open source with an extensive online user manual. Note: This article was previously submitted as a pre-print: Zachary S. L. Foster, Thomas J. Sharpton, Niklaus J. Grünwald. 2016. Metacoder : An R package for manipulation and heat tree visualization of community taxonomic data from metabar-coding. BioRxiv 071019; doi: http://dx.doi.org/10.1101/071019 ." @default.
• W3098541287 created "2020-11-23" @default.
• W3098541287 creator A5063905171 @default.
• W3098541287 creator A5076795528 @default.
• W3098541287 creator A5079138137 @default.
• W3098541287 date "2016-08-31" @default.
• W3098541287 modified "2023-10-14" @default.
• W3098541287 title "Metacoder: An R Package for Visualization and Manipulation of Community Taxonomic Diversity Data" @default.
• W3098541287 cites W1582907243 @default.
• W3098541287 cites W1881066983 @default.
• W3098541287 cites W1988925586 @default.
• W3098541287 cites W2034285706 @default.
• W3098541287 cites W2056279562 @default.
• W3098541287 cites W2063103318 @default.
• W3098541287 cites W2063695906 @default.
• W3098541287 cites W2100596675 @default.
• W3098541287 cites W2108718991 @default.
• W3098541287 cites W2120659830 @default.
• W3098541287 cites W2124141867 @default.
• W3098541287 cites W2128769815 @default.
• W3098541287 cites W2131026689 @default.
• W3098541287 cites W2147110714 @default.
• W3098541287 cites W2160947363 @default.
• W3098541287 cites W2166171121 @default.
• W3098541287 cites W2397246897 @default.
• W3098541287 cites W3210669771 @default.
• W3098541287 cites W4242729757 @default.
• W3098541287 doi "https://doi.org/10.1101/071019" @default.
• W3098541287 hasPublicationYear "2016" @default.
• W3098541287 type Work @default.
• W3098541287 sameAs 3098541287 @default.
• W3098541287 citedByCount "5" @default.
• W3098541287 countsByYear W30985412872018 @default.
• W3098541287 countsByYear W30985412872020 @default.
• W3098541287 countsByYear W30985412872023 @default.
• W3098541287 crossrefType "posted-content" @default.
• W3098541287 hasAuthorship W3098541287A5063905171 @default.
• W3098541287 hasAuthorship W3098541287A5076795528 @default.
• W3098541287 hasAuthorship W3098541287A5079138137 @default.
• W3098541287 hasBestOaLocation W30985412871 @default.
• W3098541287 hasConcept C105795698 @default.
• W3098541287 hasConcept C113174947 @default.
• W3098541287 hasConcept C124101348 @default.
• W3098541287 hasConcept C132525143 @default.
• W3098541287 hasConcept C134306372 @default.
• W3098541287 hasConcept C138958017 @default.
• W3098541287 hasConcept C154504017 @default.
• W3098541287 hasConcept C154945302 @default.
• W3098541287 hasConcept C172367668 @default.
• W3098541287 hasConcept C177264268 @default.
• W3098541287 hasConcept C186644900 @default.
• W3098541287 hasConcept C199360897 @default.
• W3098541287 hasConcept C23123220 @default.
• W3098541287 hasConcept C33923547 @default.
• W3098541287 hasConcept C36464697 @default.
• W3098541287 hasConcept C41008148 @default.
• W3098541287 hasConcept C61122496 @default.
• W3098541287 hasConcept C73555534 @default.
• W3098541287 hasConcept C80444323 @default.
• W3098541287 hasConcept C92835128 @default.
• W3098541287 hasConceptScore W3098541287C105795698 @default.
• W3098541287 hasConceptScore W3098541287C113174947 @default.
• W3098541287 hasConceptScore W3098541287C124101348 @default.
• W3098541287 hasConceptScore W3098541287C132525143 @default.
• W3098541287 hasConceptScore W3098541287C134306372 @default.
• W3098541287 hasConceptScore W3098541287C138958017 @default.
• W3098541287 hasConceptScore W3098541287C154504017 @default.
• W3098541287 hasConceptScore W3098541287C154945302 @default.
• W3098541287 hasConceptScore W3098541287C172367668 @default.
• W3098541287 hasConceptScore W3098541287C177264268 @default.
• W3098541287 hasConceptScore W3098541287C186644900 @default.
• W3098541287 hasConceptScore W3098541287C199360897 @default.
• W3098541287 hasConceptScore W3098541287C23123220 @default.
• W3098541287 hasConceptScore W3098541287C33923547 @default.
• W3098541287 hasConceptScore W3098541287C36464697 @default.
• W3098541287 hasConceptScore W3098541287C41008148 @default.
• W3098541287 hasConceptScore W3098541287C61122496 @default.
• W3098541287 hasConceptScore W3098541287C73555534 @default.
• W3098541287 hasConceptScore W3098541287C80444323 @default.
• W3098541287 hasConceptScore W3098541287C92835128 @default.
• W3098541287 hasLocation W30985412871 @default.
• W3098541287 hasLocation W30985412872 @default.
• W3098541287 hasOpenAccess W3098541287 @default.
• W3098541287 hasPrimaryLocation W30985412871 @default.
• W3098541287 hasRelatedWork W122726149 @default.
• W3098541287 hasRelatedWork W1497339382 @default.
• W3098541287 hasRelatedWork W1709979277 @default.
• W3098541287 hasRelatedWork W1803344800 @default.
• W3098541287 hasRelatedWork W1972959593 @default.
• W3098541287 hasRelatedWork W2033951552 @default.
• W3098541287 hasRelatedWork W2060910587 @default.
• W3098541287 hasRelatedWork W2110101096 @default.
• W3098541287 hasRelatedWork W2137215532 @default.
• W3098541287 hasRelatedWork W2149472792 @default.
• W3098541287 hasRelatedWork W2510766756 @default.
• W3098541287 hasRelatedWork W2530800035 @default.
• W3098541287 hasRelatedWork W2736492907 @default.
• W3098541287 hasRelatedWork W2755257103 @default.
• W3098541287 hasRelatedWork W2901473485 @default.
• W3098541287 hasRelatedWork W3093885328 @default.

• next