Matches in SemOpenAlex for { <https://semopenalex.org/work/W3113163651> ?p ?o ?g. }
- W3113163651 abstract "Abstract The MPI Bioinformatics Toolkit ( https://toolkit.tuebingen.mpg.de ) provides interactive access to a wide range of the best‐performing bioinformatics tools and databases, including the state‐of‐the‐art protein sequence comparison methods HHblits and HHpred. The Toolkit currently includes 35 external and in‐house tools, covering functionalities such as sequence similarity searching, prediction of sequence features, and sequence classification. Due to this breadth of functionality, the tight interconnection of its constituent tools, and its ease of use, the Toolkit has become an important resource for biomedical research and for teaching protein sequence analysis to students in the life sciences. In this article, we provide detailed information on utilizing the three most widely accessed tools within the Toolkit: HHpred for the detection of homologs, HHpred in conjunction with MODELLER for structure prediction and homology modeling, and CLANS for the visualization of relationships in large sequence datasets. © 2020 The Authors. Basic Protocol 1 : Sequence similarity searching using HHpred Alternate Protocol : Pairwise sequence comparison using HHpred Support Protocol : Building a custom multiple sequence alignment using PSI‐BLAST and forwarding it as input to HHpred Basic Protocol 2 : Calculation of homology models using HHpred and MODELLER Basic Protocol 3 : Cluster analysis using CLANS" @default.
- W3113163651 created "2020-12-21" @default.
- W3113163651 creator A5004262555 @default.
- W3113163651 creator A5011660516 @default.
- W3113163651 creator A5016012053 @default.
- W3113163651 creator A5018503058 @default.
- W3113163651 creator A5019985343 @default.
- W3113163651 creator A5030962194 @default.
- W3113163651 creator A5032780185 @default.
- W3113163651 date "2020-12-01" @default.
- W3113163651 modified "2023-10-14" @default.
- W3113163651 title "Protein Sequence Analysis Using the MPI Bioinformatics Toolkit" @default.
- W3113163651 cites W1568415783 @default.
- W3113163651 cites W1569186605 @default.
- W3113163651 cites W1794209129 @default.
- W3113163651 cites W1965827393 @default.
- W3113163651 cites W1969453487 @default.
- W3113163651 cites W2004941701 @default.
- W3113163651 cites W2008708467 @default.
- W3113163651 cites W2015546050 @default.
- W3113163651 cites W2051210555 @default.
- W3113163651 cites W2065283382 @default.
- W3113163651 cites W2081513604 @default.
- W3113163651 cites W2101220662 @default.
- W3113163651 cites W2102461176 @default.
- W3113163651 cites W2114649195 @default.
- W3113163651 cites W2121058167 @default.
- W3113163651 cites W2126103104 @default.
- W3113163651 cites W2127322768 @default.
- W3113163651 cites W2130479394 @default.
- W3113163651 cites W2138872556 @default.
- W3113163651 cites W2143519602 @default.
- W3113163651 cites W2144362290 @default.
- W3113163651 cites W2145268834 @default.
- W3113163651 cites W2153187042 @default.
- W3113163651 cites W2155792813 @default.
- W3113163651 cites W2158714788 @default.
- W3113163651 cites W2161072217 @default.
- W3113163651 cites W2168162456 @default.
- W3113163651 cites W2173732482 @default.
- W3113163651 cites W2343212594 @default.
- W3113163651 cites W2557595285 @default.
- W3113163651 cites W2761688050 @default.
- W3113163651 cites W2774178591 @default.
- W3113163651 cites W2798240061 @default.
- W3113163651 cites W2804222862 @default.
- W3113163651 cites W2806399642 @default.
- W3113163651 cites W2898402099 @default.
- W3113163651 cites W2913898479 @default.
- W3113163651 cites W2918063357 @default.
- W3113163651 cites W2938574745 @default.
- W3113163651 cites W2951149542 @default.
- W3113163651 cites W2972411752 @default.
- W3113163651 cites W2991012415 @default.
- W3113163651 cites W2996737396 @default.
- W3113163651 cites W2999376388 @default.
- W3113163651 cites W3136918052 @default.
- W3113163651 cites W4243601081 @default.
- W3113163651 cites W4245470729 @default.
- W3113163651 doi "https://doi.org/10.1002/cpbi.108" @default.
- W3113163651 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33315308" @default.
- W3113163651 hasPublicationYear "2020" @default.
- W3113163651 type Work @default.
- W3113163651 sameAs 3113163651 @default.
- W3113163651 citedByCount "346" @default.
- W3113163651 countsByYear W31131636512021 @default.
- W3113163651 countsByYear W31131636512022 @default.
- W3113163651 countsByYear W31131636512023 @default.
- W3113163651 crossrefType "journal-article" @default.
- W3113163651 hasAuthorship W3113163651A5004262555 @default.
- W3113163651 hasAuthorship W3113163651A5011660516 @default.
- W3113163651 hasAuthorship W3113163651A5016012053 @default.
- W3113163651 hasAuthorship W3113163651A5018503058 @default.
- W3113163651 hasAuthorship W3113163651A5019985343 @default.
- W3113163651 hasAuthorship W3113163651A5030962194 @default.
- W3113163651 hasAuthorship W3113163651A5032780185 @default.
- W3113163651 hasBestOaLocation W31131636511 @default.
- W3113163651 hasConcept C104317684 @default.
- W3113163651 hasConcept C124101348 @default.
- W3113163651 hasConcept C142724271 @default.
- W3113163651 hasConcept C154945302 @default.
- W3113163651 hasConcept C167625842 @default.
- W3113163651 hasConcept C169627665 @default.
- W3113163651 hasConcept C180384323 @default.
- W3113163651 hasConcept C181199279 @default.
- W3113163651 hasConcept C184898388 @default.
- W3113163651 hasConcept C193153401 @default.
- W3113163651 hasConcept C204787440 @default.
- W3113163651 hasConcept C2778112365 @default.
- W3113163651 hasConcept C2780385302 @default.
- W3113163651 hasConcept C36464697 @default.
- W3113163651 hasConcept C41008148 @default.
- W3113163651 hasConcept C45484198 @default.
- W3113163651 hasConcept C54355233 @default.
- W3113163651 hasConcept C55493867 @default.
- W3113163651 hasConcept C60644358 @default.
- W3113163651 hasConcept C61053724 @default.
- W3113163651 hasConcept C70721500 @default.
- W3113163651 hasConcept C71924100 @default.
- W3113163651 hasConcept C72802188 @default.