FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3122199950> ?p ?o ?g. }

• W3122199950 abstract "Abstract With a small, circular and non-protein coding RNA genome, viroids are the smallest infectious agents. They invade plants, which in turn may develop symptoms. Since their discovery about 50 years ago, more than thirty viroids have been reported and classified using as species demarcation less than 90 per cent sequence identity on the overall genome and evidence of biological divergence with respect to the closest related viroids. In the last few years, new viroids have been identified that infect latently their (frequently) woody hosts and have a narrow experimental hosts range, complicating and slowing down studies on their biology. As a consequence, several viroids are still waiting for classification. Moreover, the number of new viroids is expected to increase in the next years due to the use of high-throughput sequencing technologies with diagnostics purposes. Therefore, establishment of reliable species demarcation criteria mainly based on molecular features of viroids is needed. Here, viroid classification is reassessed and a scheme based on pairwise sequence identity matrices is developed. After identifying a threshold pairwise identity score (PWIS) for each viroid genus, to be used as a species demarcation criterion, we show that most of those yet unclassified viroids can be assigned to a known or to a new species, thus limiting the need for additional biological evidence to only a few more complex situations. The advantages of this PWIS-based method are that the proposed identity thresholds for species demarcations are not arbitrarily established and evidence for biological divergence is not mandatory. Importantly, the current classification is not essentially modified. A protocol for a tentative fast classification of new viroids according to the proposed approach is also provided." @default.
• W3122199950 created "2021-02-01" @default.
• W3122199950 creator A5017678940 @default.
• W3122199950 creator A5036982385 @default.
• W3122199950 creator A5040839629 @default.
• W3122199950 creator A5063490459 @default.
• W3122199950 creator A5075603930 @default.
• W3122199950 date "2021-01-01" @default.
• W3122199950 modified "2023-09-25" @default.
• W3122199950 title "Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices" @default.
• W3122199950 cites W1593960337 @default.
• W3122199950 cites W1971075914 @default.
• W3122199950 cites W1972076224 @default.
• W3122199950 cites W1979771772 @default.
• W3122199950 cites W1984469451 @default.
• W3122199950 cites W1990663114 @default.
• W3122199950 cites W1999405715 @default.
• W3122199950 cites W2001332132 @default.
• W3122199950 cites W2002709617 @default.
• W3122199950 cites W2007234034 @default.
• W3122199950 cites W2011409231 @default.
• W3122199950 cites W2014449505 @default.
• W3122199950 cites W2016381886 @default.
• W3122199950 cites W2027341070 @default.
• W3122199950 cites W2028522158 @default.
• W3122199950 cites W2029836841 @default.
• W3122199950 cites W2032092970 @default.
• W3122199950 cites W2033499596 @default.
• W3122199950 cites W2033921618 @default.
• W3122199950 cites W2037158686 @default.
• W3122199950 cites W2037578863 @default.
• W3122199950 cites W2053462058 @default.
• W3122199950 cites W2071480871 @default.
• W3122199950 cites W2092516858 @default.
• W3122199950 cites W2094339562 @default.
• W3122199950 cites W2106882534 @default.
• W3122199950 cites W2116560501 @default.
• W3122199950 cites W2132926880 @default.
• W3122199950 cites W2140616805 @default.
• W3122199950 cites W2148773326 @default.
• W3122199950 cites W2158242638 @default.
• W3122199950 cites W2163007174 @default.
• W3122199950 cites W2165056322 @default.
• W3122199950 cites W2174353003 @default.
• W3122199950 cites W2317449962 @default.
• W3122199950 cites W2513565899 @default.
• W3122199950 cites W2583706756 @default.
• W3122199950 cites W2613198068 @default.
• W3122199950 cites W2615620529 @default.
• W3122199950 cites W2620866962 @default.
• W3122199950 cites W2735271322 @default.
• W3122199950 cites W2740010566 @default.
• W3122199950 cites W2740044392 @default.
• W3122199950 cites W2740392843 @default.
• W3122199950 cites W2740849608 @default.
• W3122199950 cites W2741867586 @default.
• W3122199950 cites W2763586202 @default.
• W3122199950 cites W276987934 @default.
• W3122199950 cites W2791101914 @default.
• W3122199950 cites W2792347106 @default.
• W3122199950 cites W2799524357 @default.
• W3122199950 cites W2808618956 @default.
• W3122199950 cites W2899852034 @default.
• W3122199950 cites W2970461760 @default.
• W3122199950 cites W2979706216 @default.
• W3122199950 cites W2981929441 @default.
• W3122199950 cites W2995740520 @default.
• W3122199950 cites W3009906937 @default.
• W3122199950 cites W3014151194 @default.
• W3122199950 cites W3015445377 @default.
• W3122199950 cites W3097407122 @default.
• W3122199950 cites W4206712614 @default.
• W3122199950 doi "https://doi.org/10.1093/ve/veab001" @default.
• W3122199950 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7887442" @default.
• W3122199950 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33623708" @default.
• W3122199950 hasPublicationYear "2021" @default.
• W3122199950 type Work @default.
• W3122199950 sameAs 3122199950 @default.
• W3122199950 citedByCount "9" @default.
• W3122199950 countsByYear W31221999502021 @default.
• W3122199950 countsByYear W31221999502022 @default.
• W3122199950 countsByYear W31221999502023 @default.
• W3122199950 crossrefType "journal-article" @default.
• W3122199950 hasAuthorship W3122199950A5017678940 @default.
• W3122199950 hasAuthorship W3122199950A5036982385 @default.
• W3122199950 hasAuthorship W3122199950A5040839629 @default.
• W3122199950 hasAuthorship W3122199950A5063490459 @default.
• W3122199950 hasAuthorship W3122199950A5075603930 @default.
• W3122199950 hasBestOaLocation W31221999501 @default.
• W3122199950 hasConcept C104317684 @default.
• W3122199950 hasConcept C109110057 @default.
• W3122199950 hasConcept C121332964 @default.
• W3122199950 hasConcept C127413603 @default.
• W3122199950 hasConcept C141231307 @default.
• W3122199950 hasConcept C154945302 @default.
• W3122199950 hasConcept C159047783 @default.
• W3122199950 hasConcept C184898388 @default.
• W3122199950 hasConcept C188198153 @default.
• W3122199950 hasConcept C24890656 @default.
• W3122199950 hasConcept C2522874641 @default.

• next