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- W3129021808 abstract "Abstract Summary Many biochemical processes in living organisms take place inside compartments that can interact with each other and remodel over time. In a recent work, we have shown how the stochastic dynamics of a compartmentalized biochemical system can be effectively studied using moment equations. With this technique, the time evolution of a compartment population is summarized using a finite number of ordinary differential equations, which can be analyzed very efficiently. However, the derivation of moment equations by hand can become time-consuming for systems comprising multiple reactants and interactions. Here we present Compartor, a toolbox that automatically generates the moment equations associated with a user-defined compartmentalized system. Through the moment equation method, Compartor renders the analysis of stochastic population models accessible to a broader scientific community. Availability and implementation Compartor is provided as a Python package and is available at https://pypi.org/project/compartor/. Source code and usage tutorials for Compartor are available at https://github.com/zechnerlab/Compartor." @default.
- W3129021808 created "2021-02-15" @default.
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- W3129021808 date "2021-02-04" @default.
- W3129021808 modified "2023-09-27" @default.
- W3129021808 title "Compartor: a toolbox for the automatic generation of moment equations for dynamic compartment populations" @default.
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- W3129021808 doi "https://doi.org/10.1093/bioinformatics/btab058" @default.
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