FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3131159097> ?p ?o ?g. }

• W3131159097 endingPage "100104" @default.
• W3131159097 startingPage "100104" @default.
• W3131159097 abstract "We read with interest on the case of SARS-CoV-2 re-infection on the importance of genomic information in understanding the true burden of COVID-19 [[1]Prado-Vivar B Becerra-Wong M Guadalupe JJ et al.A case of SARS-CoV-2 reinfection in Ecuador.Lancet Infect Dis. 2020; Summary Full Text Full Text PDF PubMed Scopus (53) Google Scholar]. After the emergence of SARS-CoV-2 in China, initial cases in Japan were travel-associated cases from affected areas, as determined by the viral sequence analyses. In concordance with global COVID-19 epidemic, the Asian SARS-CoV-2 clades were dominant until the beginning of March, 2020 [[2]Furuse Y Ko YK Saito M et al.Epidemiology of COVID-19 outbreak in Japan, from January-March 2020.Jpn J Infect Dis. 2020; 73: 391-393Crossref PubMed Scopus (62) Google Scholar]. However, as of April, with the emergence of European clades (20A, 20B, 20C) as the dominant clade in Japan, there were no reports on local transmission of the Asian clades (19A and 19B) within the following weeks (figure). Our analysis however indicates the Asian clade remains in circulation, with at least two strains confirmed locally. Both strains (Japan/Nagasaki-24_7-1/2020 and Japan/Nagasaki-24_7-2/2020), isolated in July 2020, belonged to the “diminished” Asian clade, 19B (figure). In addition to the 628 isolates from Japan, and the 4981 globally isolated strains, we observed that both of the sampled strains were of an orphaned monophyletic clade, in which the next closest strain of this clade was a locally strain that was isolated in January (Japan/TY-WK-521/2020) (Fig. 1). While there may be limited sampling in certain geographical areas, we are confident that this distinct clade represents initial introduction from China, followed by basal amplification and persistent community maintenance of transmission cycle. While outbreaks may derive from local spread after introduction events, these events can generally be traced by using phylogenetically ancestral viruses of outbreak clades. In this context, the detection of persistent transmission of an orphan clade that is unique to Japan indicates local transmission that may remain undetected by the Japanese surveillance mechanism. While mortality rate is low with advanced healthcare in Japan, there remains major challenges in Japan's response to COVID-19: publicly available SARS-CoV-2 genomes were not sampled in strict proportion to the reflect the national burden of infection, and genetic information processing and there may be time-lag between information sharing. Although both traditional public health surveillance and genomic epidemiology has provided insights into outbreak events [[4]Tabata S Imai K Kawano S et al.Clinical characteristics of COVID-19 in 104 people with SARS-CoV-2 infection on the Diamond Princess cruise ship: a retrospective analysis.Lancet Infect Dis. 2020; 20: 1043-1050Summary Full Text Full Text PDF PubMed Scopus (167) Google Scholar], in this instance, blackouts in information sharing and transparency can potentially lead to information disparity. Additionally, genetic information may offer crucial evidence for re-infection and elucidation of disease burden. As genetic relationships can shed light on the underlying transmission patterns of spread in Japan and, considering the rapid global expansion of COVID-19 epidemic, our results highlight that policies to include real-time public-sharing, transparency and empowering of new systems for infectious disease surveillance would be critical in the control of SARS-CoV-2 transmission. We declare no competing interests. We thank health care practitioners of the clinics and hospitals in Japan who supported the study. This research was supported by Japan Agency for Medical Research and Development (AMED) under Grant Number JP20wm0125006 (Japan Program for Infectious Diseases Research and Infrastructure), and the Japan Society for the Promotion of Science KAKENHI (JP19K24679). WHO Global Reference Laboratory for COVID-19, WHO Collaborating Center for Reference and Research on Tropical and Emerging Virus Diseases, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan (TN, SI, MMNT, MLM, KM), Department of Respiratory Medicine, Nagasaki University Hospital, Nagasaki, Japan, Department of Infectious Diseases (TT, NA, TM, HM), Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan (TT, TM, KI), Infection Control and Education Center, Nagasaki University Hospital, Nagasaki, Japan (KI)." @default.
• W3131159097 created "2021-03-01" @default.
• W3131159097 creator A5000747147 @default.
• W3131159097 creator A5013913306 @default.
• W3131159097 creator A5025718032 @default.
• W3131159097 creator A5026064923 @default.
• W3131159097 creator A5054001657 @default.
• W3131159097 creator A5058092938 @default.
• W3131159097 creator A5069266409 @default.
• W3131159097 creator A5071159100 @default.
• W3131159097 creator A5087522888 @default.
• W3131159097 creator A5091296972 @default.
• W3131159097 date "2021-02-01" @default.
• W3131159097 modified "2023-10-18" @default.
• W3131159097 title "COVID-19 cryptic transmission and genetic information blackouts: Need for effective surveillance policy to better understand disease burden" @default.
• W3131159097 cites W2605343262 @default.
• W3131159097 cites W2952045272 @default.
• W3131159097 cites W3019874159 @default.
• W3131159097 cites W3034523319 @default.
• W3131159097 doi "https://doi.org/10.1016/j.lanwpc.2021.100104" @default.
• W3131159097 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7882913" @default.
• W3131159097 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33615284" @default.
• W3131159097 hasPublicationYear "2021" @default.
• W3131159097 type Work @default.
• W3131159097 sameAs 3131159097 @default.
• W3131159097 citedByCount "6" @default.
• W3131159097 countsByYear W31311590972021 @default.
• W3131159097 countsByYear W31311590972022 @default.
• W3131159097 crossrefType "journal-article" @default.
• W3131159097 hasAuthorship W3131159097A5000747147 @default.
• W3131159097 hasAuthorship W3131159097A5013913306 @default.
• W3131159097 hasAuthorship W3131159097A5025718032 @default.
• W3131159097 hasAuthorship W3131159097A5026064923 @default.
• W3131159097 hasAuthorship W3131159097A5054001657 @default.
• W3131159097 hasAuthorship W3131159097A5058092938 @default.
• W3131159097 hasAuthorship W3131159097A5069266409 @default.
• W3131159097 hasAuthorship W3131159097A5071159100 @default.
• W3131159097 hasAuthorship W3131159097A5087522888 @default.
• W3131159097 hasAuthorship W3131159097A5091296972 @default.
• W3131159097 hasBestOaLocation W31311590971 @default.
• W3131159097 hasConcept C104317684 @default.
• W3131159097 hasConcept C116675565 @default.
• W3131159097 hasConcept C119599485 @default.
• W3131159097 hasConcept C12326286 @default.
• W3131159097 hasConcept C127413603 @default.
• W3131159097 hasConcept C142724271 @default.
• W3131159097 hasConcept C144024400 @default.
• W3131159097 hasConcept C149923435 @default.
• W3131159097 hasConcept C159047783 @default.
• W3131159097 hasConcept C160798450 @default.
• W3131159097 hasConcept C166957645 @default.
• W3131159097 hasConcept C191935318 @default.
• W3131159097 hasConcept C193252679 @default.
• W3131159097 hasConcept C205649164 @default.
• W3131159097 hasConcept C2779134260 @default.
• W3131159097 hasConcept C2779473830 @default.
• W3131159097 hasConcept C3007834351 @default.
• W3131159097 hasConcept C3008058167 @default.
• W3131159097 hasConcept C44465124 @default.
• W3131159097 hasConcept C524204448 @default.
• W3131159097 hasConcept C54355233 @default.
• W3131159097 hasConcept C55493867 @default.
• W3131159097 hasConcept C71924100 @default.
• W3131159097 hasConcept C761482 @default.
• W3131159097 hasConcept C83867959 @default.
• W3131159097 hasConcept C86803240 @default.
• W3131159097 hasConceptScore W3131159097C104317684 @default.
• W3131159097 hasConceptScore W3131159097C116675565 @default.
• W3131159097 hasConceptScore W3131159097C119599485 @default.
• W3131159097 hasConceptScore W3131159097C12326286 @default.
• W3131159097 hasConceptScore W3131159097C127413603 @default.
• W3131159097 hasConceptScore W3131159097C142724271 @default.
• W3131159097 hasConceptScore W3131159097C144024400 @default.
• W3131159097 hasConceptScore W3131159097C149923435 @default.
• W3131159097 hasConceptScore W3131159097C159047783 @default.
• W3131159097 hasConceptScore W3131159097C160798450 @default.
• W3131159097 hasConceptScore W3131159097C166957645 @default.
• W3131159097 hasConceptScore W3131159097C191935318 @default.
• W3131159097 hasConceptScore W3131159097C193252679 @default.
• W3131159097 hasConceptScore W3131159097C205649164 @default.
• W3131159097 hasConceptScore W3131159097C2779134260 @default.
• W3131159097 hasConceptScore W3131159097C2779473830 @default.
• W3131159097 hasConceptScore W3131159097C3007834351 @default.
• W3131159097 hasConceptScore W3131159097C3008058167 @default.
• W3131159097 hasConceptScore W3131159097C44465124 @default.
• W3131159097 hasConceptScore W3131159097C524204448 @default.
• W3131159097 hasConceptScore W3131159097C54355233 @default.
• W3131159097 hasConceptScore W3131159097C55493867 @default.
• W3131159097 hasConceptScore W3131159097C71924100 @default.
• W3131159097 hasConceptScore W3131159097C761482 @default.
• W3131159097 hasConceptScore W3131159097C83867959 @default.
• W3131159097 hasConceptScore W3131159097C86803240 @default.
• W3131159097 hasFunder F4320311405 @default.
• W3131159097 hasFunder F4320334764 @default.
• W3131159097 hasLocation W31311590971 @default.
• W3131159097 hasLocation W31311590972 @default.
• W3131159097 hasOpenAccess W3131159097 @default.
• W3131159097 hasPrimaryLocation W31311590971 @default.

• next