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- W3134787199 endingPage "107872" @default.
- W3134787199 startingPage "107872" @default.
- W3134787199 abstract "Aptamers are short oligonucleotides that possess high specificity and affinity against their target. Generated via Systematic Evolution of Ligands by Exponential Enrichment, (SELEX) in vitro, they were screened and enriched. This review covering the study utilizing bioinformatics tools to analyze primary sequence, secondary and tertiary structure prediction, as well as docking simulation for various aptamers and their ligand interaction. Literature was pooled from Web of Science (WoS) and Scopus databases until December 18, 2020 using specific search string related to DNA aptamers, in silico, structure prediction, and docking simulation. Out of 330 published articles, 38 articles were assessed in the analysis based on the predefined inclusion and exclusion criteria. It was found that Mfold and RNA Composer web server is the most popular tool in secondary and tertiary structure prediction of DNA aptamers, respectively. Meanwhile, in docking simulation, ZDOCK and AutoDock are preferred to analyze binding interaction in the aptamer-ligand complex. This review reports a brief framework of recent developments of in silico approaches that provide predictive structural information of ssDNA aptamer." @default.
- W3134787199 created "2021-03-15" @default.
- W3134787199 creator A5015078892 @default.
- W3134787199 creator A5017296020 @default.
- W3134787199 creator A5071239508 @default.
- W3134787199 creator A5090634586 @default.
- W3134787199 date "2021-06-01" @default.
- W3134787199 modified "2023-09-27" @default.
- W3134787199 title "In silico approach for Post-SELEX DNA aptamers: A mini-review" @default.
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- W3134787199 doi "https://doi.org/10.1016/j.jmgm.2021.107872" @default.
- W3134787199 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33765525" @default.
- W3134787199 hasPublicationYear "2021" @default.
- W3134787199 type Work @default.