FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3135188462> ?p ?o ?g. }

• W3135188462 endingPage "e0248274" @default.
• W3135188462 startingPage "e0248274" @default.
• W3135188462 abstract "Plant growth-promoting bacteria (PGPB) are a heterogeneous group of bacteria that can exert beneficial effects on plant growth directly or indirectly by different mechanisms. PGPB-based inoculant formulation has been used to replace chemical fertilizers and pesticides. In our previous studies, two endophytic endospore-forming bacteria identified as Bacillus altitudinis were isolated from roots of Ilex paraguariensis St. Hil. seedlings and selected for their plant growth-promoting (PGP) properties shown in vitro and in vivo . The purposes of this work were to assemble the genomes of B . altitudinis 19RS3 and T5S-T4, using different assemblers available for Windows and Linux and to select the best assembly for each strain. Both genomes were also automatically annotated to detect PGP genes and compare sequences with other genomes reported. Library construction and draft genome sequencing were performed by Macrogen services. Raw reads were filtered using the Trimmomatic tool. Genomes were assembled using SPAdes, ABySS, Velvet, and SOAPdenovo2 assemblers for Linux, and Geneious and CLC Genomics Workbench assemblers for Windows. Assembly evaluation was done by the QUAST tool. The parameters evaluated were the number of contigs ≥ 500 bp and ≥ 1000 bp, the length of the longest contig, and the N50 value. For genome annotation PROKKA, RAST, and KAAS tools were used. The best assembly for both genomes was obtained using Velvet. The B . altitudinis 19RS3 genome was assembled into 15 contigs with an N50 value of 1,943,801 bp. The B . altitudinis T5S-T4 genome was assembled into 24 contigs with an N50 of 344,151 bp. Both genomes comprise several genes related to PGP mechanisms, such as those for nitrogen fixation, iron metabolism, phosphate metabolism, and auxin biosynthesis. The results obtained offer the basis for a better understanding of B . altitudinis 19RS3 and T5S-T4 and make them promissory for bioinoculant development." @default.
• W3135188462 created "2021-03-15" @default.
• W3135188462 creator A5002506913 @default.
• W3135188462 creator A5026200431 @default.
• W3135188462 creator A5026693778 @default.
• W3135188462 creator A5039727445 @default.
• W3135188462 creator A5062186276 @default.
• W3135188462 creator A5073623153 @default.
• W3135188462 date "2021-03-11" @default.
• W3135188462 modified "2023-10-14" @default.
• W3135188462 title "De novo genome assembly of Bacillus altitudinis 19RS3 and Bacillus altitudinis T5S-T4, two plant growth-promoting bacteria isolated from Ilex paraguariensis St. Hil. (yerba mate)" @default.
• W3135188462 cites W1505718634 @default.
• W3135188462 cites W1966822396 @default.
• W3135188462 cites W1974979050 @default.
• W3135188462 cites W1997246534 @default.
• W3135188462 cites W2004548026 @default.
• W3135188462 cites W2017666255 @default.
• W3135188462 cites W2025883615 @default.
• W3135188462 cites W2060139884 @default.
• W3135188462 cites W2066477086 @default.
• W3135188462 cites W2091593797 @default.
• W3135188462 cites W2096093282 @default.
• W3135188462 cites W2104014945 @default.
• W3135188462 cites W2107772251 @default.
• W3135188462 cites W2120902911 @default.
• W3135188462 cites W2128880918 @default.
• W3135188462 cites W2131271579 @default.
• W3135188462 cites W2133579817 @default.
• W3135188462 cites W2137206291 @default.
• W3135188462 cites W2137917611 @default.
• W3135188462 cites W2139118683 @default.
• W3135188462 cites W2160440240 @default.
• W3135188462 cites W2160969485 @default.
• W3135188462 cites W2168999294 @default.
• W3135188462 cites W2291614554 @default.
• W3135188462 cites W2303084576 @default.
• W3135188462 cites W2466451751 @default.
• W3135188462 cites W2567733333 @default.
• W3135188462 cites W2583188519 @default.
• W3135188462 cites W2603433036 @default.
• W3135188462 cites W2734738358 @default.
• W3135188462 cites W2744808346 @default.
• W3135188462 cites W2750683416 @default.
• W3135188462 cites W2750886894 @default.
• W3135188462 cites W2772101772 @default.
• W3135188462 cites W2793128671 @default.
• W3135188462 cites W2793168101 @default.
• W3135188462 cites W2805695678 @default.
• W3135188462 cites W2808352813 @default.
• W3135188462 cites W2895878640 @default.
• W3135188462 cites W2917094852 @default.
• W3135188462 cites W2944146387 @default.
• W3135188462 cites W2947717990 @default.
• W3135188462 cites W2953100295 @default.
• W3135188462 cites W2965167849 @default.
• W3135188462 cites W2972879831 @default.
• W3135188462 cites W3008434527 @default.
• W3135188462 cites W3038213940 @default.
• W3135188462 cites W3038495334 @default.
• W3135188462 cites W3045081487 @default.
• W3135188462 cites W4242002074 @default.
• W3135188462 doi "https://doi.org/10.1371/journal.pone.0248274" @default.
• W3135188462 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7954119" @default.
• W3135188462 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33705487" @default.
• W3135188462 hasPublicationYear "2021" @default.
• W3135188462 type Work @default.
• W3135188462 sameAs 3135188462 @default.
• W3135188462 citedByCount "5" @default.
• W3135188462 countsByYear W31351884622021 @default.
• W3135188462 countsByYear W31351884622022 @default.
• W3135188462 countsByYear W31351884622023 @default.
• W3135188462 crossrefType "journal-article" @default.
• W3135188462 hasAuthorship W3135188462A5002506913 @default.
• W3135188462 hasAuthorship W3135188462A5026200431 @default.
• W3135188462 hasAuthorship W3135188462A5026693778 @default.
• W3135188462 hasAuthorship W3135188462A5039727445 @default.
• W3135188462 hasAuthorship W3135188462A5062186276 @default.
• W3135188462 hasAuthorship W3135188462A5073623153 @default.
• W3135188462 hasBestOaLocation W31351884621 @default.
• W3135188462 hasConcept C104317684 @default.
• W3135188462 hasConcept C141231307 @default.
• W3135188462 hasConcept C150194340 @default.
• W3135188462 hasConcept C162317418 @default.
• W3135188462 hasConcept C189206191 @default.
• W3135188462 hasConcept C18949551 @default.
• W3135188462 hasConcept C54355233 @default.
• W3135188462 hasConcept C59582021 @default.
• W3135188462 hasConcept C70721500 @default.
• W3135188462 hasConcept C86803240 @default.
• W3135188462 hasConceptScore W3135188462C104317684 @default.
• W3135188462 hasConceptScore W3135188462C141231307 @default.
• W3135188462 hasConceptScore W3135188462C150194340 @default.
• W3135188462 hasConceptScore W3135188462C162317418 @default.
• W3135188462 hasConceptScore W3135188462C189206191 @default.
• W3135188462 hasConceptScore W3135188462C18949551 @default.
• W3135188462 hasConceptScore W3135188462C54355233 @default.
• W3135188462 hasConceptScore W3135188462C59582021 @default.
• W3135188462 hasConceptScore W3135188462C70721500 @default.

• next