Matches in SemOpenAlex for { <https://semopenalex.org/work/W3136607070> ?p ?o ?g. }
Showing items 1 to 93 of
93
with 100 items per page.
- W3136607070 abstract "Abstract Background Relation extraction is a fundamental task for extracting gene-disease associations from biomedical text. Existing tools have limited capacity, as they can extract gene-disease associations only from single sentences or abstract texts. Results In this work, we propose RENET2, a deep learning-based relation extraction method, which implements section filtering and ambiguous relations modeling to extract gene-disease associations from full-text articles. We designed a novel iterative training data expansion strategy to build an annotated full-text dataset to resolve the scarcity of labels on full-text articles. In our experiments, RENET2 achieved an F1-score of 72.13% for extracting gene-disease associations from an annotated full-text dataset, which was 27.22%, 30.30% and 29.24% higher than the best existing tools BeFree, DTMiner and BioBERT, respectively. We applied RENET2 to (1) ~1.89M full-text articles from PMC and found ~3.72M gene-disease associations; and (2) the LitCovid articles set and ranked the top 15 proteins associated with COVID-19, supported by recent articles. Conclusion RENET2 is an efficient and accurate method for full-text gene-disease association extraction. The source-code, manually curated abstract/full-text training data, and results of RENET2 are available at https://github.com/sujunhao/RENET2 ." @default.
- W3136607070 created "2021-03-29" @default.
- W3136607070 creator A5027440970 @default.
- W3136607070 creator A5033934413 @default.
- W3136607070 creator A5043198787 @default.
- W3136607070 creator A5077116003 @default.
- W3136607070 creator A5084222809 @default.
- W3136607070 date "2021-03-19" @default.
- W3136607070 modified "2023-10-01" @default.
- W3136607070 title "RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion" @default.
- W3136607070 cites W2020278455 @default.
- W3136607070 cites W2029017735 @default.
- W3136607070 cites W2036935277 @default.
- W3136607070 cites W2056337725 @default.
- W3136607070 cites W2083342361 @default.
- W3136607070 cites W2121802207 @default.
- W3136607070 cites W2130504509 @default.
- W3136607070 cites W2136437513 @default.
- W3136607070 cites W2236252949 @default.
- W3136607070 cites W2512727383 @default.
- W3136607070 cites W2734608416 @default.
- W3136607070 cites W2911489562 @default.
- W3136607070 cites W2920198243 @default.
- W3136607070 cites W2946690328 @default.
- W3136607070 cites W3009926341 @default.
- W3136607070 cites W3014750385 @default.
- W3136607070 cites W3027446665 @default.
- W3136607070 cites W3105753785 @default.
- W3136607070 doi "https://doi.org/10.1101/2021.03.18.436005" @default.
- W3136607070 hasPublicationYear "2021" @default.
- W3136607070 type Work @default.
- W3136607070 sameAs 3136607070 @default.
- W3136607070 citedByCount "0" @default.
- W3136607070 crossrefType "posted-content" @default.
- W3136607070 hasAuthorship W3136607070A5027440970 @default.
- W3136607070 hasAuthorship W3136607070A5033934413 @default.
- W3136607070 hasAuthorship W3136607070A5043198787 @default.
- W3136607070 hasAuthorship W3136607070A5077116003 @default.
- W3136607070 hasAuthorship W3136607070A5084222809 @default.
- W3136607070 hasBestOaLocation W31366070701 @default.
- W3136607070 hasConcept C124101348 @default.
- W3136607070 hasConcept C142853389 @default.
- W3136607070 hasConcept C153604712 @default.
- W3136607070 hasConcept C154945302 @default.
- W3136607070 hasConcept C15744967 @default.
- W3136607070 hasConcept C162324750 @default.
- W3136607070 hasConcept C177264268 @default.
- W3136607070 hasConcept C187736073 @default.
- W3136607070 hasConcept C199360897 @default.
- W3136607070 hasConcept C204321447 @default.
- W3136607070 hasConcept C23123220 @default.
- W3136607070 hasConcept C25343380 @default.
- W3136607070 hasConcept C2776760102 @default.
- W3136607070 hasConcept C2779135771 @default.
- W3136607070 hasConcept C2780451532 @default.
- W3136607070 hasConcept C41008148 @default.
- W3136607070 hasConcept C51632099 @default.
- W3136607070 hasConcept C542102704 @default.
- W3136607070 hasConceptScore W3136607070C124101348 @default.
- W3136607070 hasConceptScore W3136607070C142853389 @default.
- W3136607070 hasConceptScore W3136607070C153604712 @default.
- W3136607070 hasConceptScore W3136607070C154945302 @default.
- W3136607070 hasConceptScore W3136607070C15744967 @default.
- W3136607070 hasConceptScore W3136607070C162324750 @default.
- W3136607070 hasConceptScore W3136607070C177264268 @default.
- W3136607070 hasConceptScore W3136607070C187736073 @default.
- W3136607070 hasConceptScore W3136607070C199360897 @default.
- W3136607070 hasConceptScore W3136607070C204321447 @default.
- W3136607070 hasConceptScore W3136607070C23123220 @default.
- W3136607070 hasConceptScore W3136607070C25343380 @default.
- W3136607070 hasConceptScore W3136607070C2776760102 @default.
- W3136607070 hasConceptScore W3136607070C2779135771 @default.
- W3136607070 hasConceptScore W3136607070C2780451532 @default.
- W3136607070 hasConceptScore W3136607070C41008148 @default.
- W3136607070 hasConceptScore W3136607070C51632099 @default.
- W3136607070 hasConceptScore W3136607070C542102704 @default.
- W3136607070 hasLocation W31366070701 @default.
- W3136607070 hasOpenAccess W3136607070 @default.
- W3136607070 hasPrimaryLocation W31366070701 @default.
- W3136607070 hasRelatedWork W1509467138 @default.
- W3136607070 hasRelatedWork W2528512298 @default.
- W3136607070 hasRelatedWork W2549855657 @default.
- W3136607070 hasRelatedWork W2753023842 @default.
- W3136607070 hasRelatedWork W2807524541 @default.
- W3136607070 hasRelatedWork W2883550961 @default.
- W3136607070 hasRelatedWork W2888033806 @default.
- W3136607070 hasRelatedWork W2993873509 @default.
- W3136607070 hasRelatedWork W3002472320 @default.
- W3136607070 hasRelatedWork W3107474891 @default.
- W3136607070 isParatext "false" @default.
- W3136607070 isRetracted "false" @default.
- W3136607070 magId "3136607070" @default.
- W3136607070 workType "article" @default.