FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3138548445> ?p ?o ?g. }

• W3138548445 abstract "Abstract Background Chile peppers ( Capsicum spp.) are among the most important horticultural crops in the world due to their number of uses. They are considered a major cultural and economic crop in the state of New Mexico in the United States. Evaluating genetic diversity in current New Mexican germplasm would facilitate genetic improvement for different traits. This study assessed genetic diversity, population structure, and linkage disequilibrium (LD) among 165 chile pepper genotypes using single nucleotide polymorphism (SNP) markers derived from genotyping-by-sequencing (GBS). Results A GBS approach identified 66,750 high-quality SNP markers with known map positions distributed across the 12 chromosomes of Capsicum . Principal components analysis revealed four distinct clusters based on species. Neighbor-joining phylogenetic analysis among New Mexico State University (NMSU) chile pepper cultivars showed two main clusters, where the C. annuum genotypes grouped together based on fruit or pod type. A Bayesian clustering approach for the Capsicum population inferred K = 2 as the optimal number of clusters, where the C. chinense and C. frutescens grouped in a single cluster. Analysis of molecular variance revealed majority of variation to be between the Capsicum species (76.08 %). Extensive LD decay (~ 5.59 Mb) across the whole Capsicum population was observed, demonstrating that a lower number of markers would be required for implementing genome wide association studies for different traits in New Mexican type chile peppers. Tajima’s D values demonstrated positive selection, population bottleneck, and balancing selection for the New Mexico Capsicum population. Genetic diversity for the New Mexican chile peppers was relatively low, indicating the need to introduce new alleles in the breeding program to broaden the genetic base of current germplasm. Conclusions Genetic diversity among New Mexican chile peppers was evaluated using GBS-derived SNP markers and genetic relatedness on the species level was observed. Introducing novel alleles from other breeding programs or from wild species could help increase diversity in current germplasm. We present valuable information for future association mapping and genomic selection for different traits for New Mexican chile peppers for genetic improvement through marker-assisted breeding." @default.
• W3138548445 created "2021-03-29" @default.
• W3138548445 creator A5017485887 @default.
• W3138548445 creator A5029153116 @default.
• W3138548445 creator A5041108551 @default.
• W3138548445 creator A5077053318 @default.
• W3138548445 date "2021-05-17" @default.
• W3138548445 modified "2023-10-09" @default.
• W3138548445 title "Single nucleotide polymorphisms reveal genetic diversity in New Mexican chile peppers (Capsicum spp.)" @default.
• W3138548445 cites W1781543355 @default.
• W3138548445 cites W1907271726 @default.
• W3138548445 cites W1919772617 @default.
• W3138548445 cites W1969660305 @default.
• W3138548445 cites W1972216668 @default.
• W3138548445 cites W1975465867 @default.
• W3138548445 cites W1978734836 @default.
• W3138548445 cites W1980070364 @default.
• W3138548445 cites W1987692188 @default.
• W3138548445 cites W1993304674 @default.
• W3138548445 cites W2003189057 @default.
• W3138548445 cites W2016603972 @default.
• W3138548445 cites W2017666239 @default.
• W3138548445 cites W2035839217 @default.
• W3138548445 cites W2047965893 @default.
• W3138548445 cites W2061549418 @default.
• W3138548445 cites W2062677240 @default.
• W3138548445 cites W2064301248 @default.
• W3138548445 cites W2079201860 @default.
• W3138548445 cites W2098126593 @default.
• W3138548445 cites W2103441770 @default.
• W3138548445 cites W2110035718 @default.
• W3138548445 cites W2112941921 @default.
• W3138548445 cites W2115605381 @default.
• W3138548445 cites W2120405557 @default.
• W3138548445 cites W2131271579 @default.
• W3138548445 cites W2140784970 @default.
• W3138548445 cites W2144410236 @default.
• W3138548445 cites W2147476214 @default.
• W3138548445 cites W2153508141 @default.
• W3138548445 cites W2160158855 @default.
• W3138548445 cites W2161339576 @default.
• W3138548445 cites W2165356360 @default.
• W3138548445 cites W2175030510 @default.
• W3138548445 cites W2183858296 @default.
• W3138548445 cites W2210495686 @default.
• W3138548445 cites W2310742968 @default.
• W3138548445 cites W2338446910 @default.
• W3138548445 cites W2346906878 @default.
• W3138548445 cites W2470921745 @default.
• W3138548445 cites W2478769938 @default.
• W3138548445 cites W2497326077 @default.
• W3138548445 cites W2513208658 @default.
• W3138548445 cites W2546479487 @default.
• W3138548445 cites W2549976854 @default.
• W3138548445 cites W2551334422 @default.
• W3138548445 cites W2556352473 @default.
• W3138548445 cites W2593984284 @default.
• W3138548445 cites W2601194320 @default.
• W3138548445 cites W2611179757 @default.
• W3138548445 cites W275555990 @default.
• W3138548445 cites W2766465664 @default.
• W3138548445 cites W2783828147 @default.
• W3138548445 cites W2805741266 @default.
• W3138548445 cites W2887436432 @default.
• W3138548445 cites W2895682626 @default.
• W3138548445 cites W2897163304 @default.
• W3138548445 cites W2904564733 @default.
• W3138548445 cites W2914489509 @default.
• W3138548445 cites W2943698747 @default.
• W3138548445 cites W2945526271 @default.
• W3138548445 cites W2950559019 @default.
• W3138548445 cites W2980152314 @default.
• W3138548445 cites W2998218911 @default.
• W3138548445 cites W3005927598 @default.
• W3138548445 cites W3007832669 @default.
• W3138548445 cites W3013116927 @default.
• W3138548445 cites W3013800998 @default.
• W3138548445 cites W3019689148 @default.
• W3138548445 cites W610503282 @default.
• W3138548445 doi "https://doi.org/10.1186/s12864-021-07662-7" @default.
• W3138548445 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/8130101" @default.
• W3138548445 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34000992" @default.
• W3138548445 hasPublicationYear "2021" @default.
• W3138548445 type Work @default.
• W3138548445 sameAs 3138548445 @default.
• W3138548445 citedByCount "11" @default.
• W3138548445 countsByYear W31385484452021 @default.
• W3138548445 countsByYear W31385484452022 @default.
• W3138548445 countsByYear W31385484452023 @default.
• W3138548445 crossrefType "journal-article" @default.
• W3138548445 hasAuthorship W3138548445A5017485887 @default.
• W3138548445 hasAuthorship W3138548445A5029153116 @default.
• W3138548445 hasAuthorship W3138548445A5041108551 @default.
• W3138548445 hasAuthorship W3138548445A5077053318 @default.
• W3138548445 hasBestOaLocation W31385484451 @default.
• W3138548445 hasConcept C104317684 @default.
• W3138548445 hasConcept C135763542 @default.
• W3138548445 hasConcept C144024400 @default.
• W3138548445 hasConcept C144027150 @default.
• W3138548445 hasConcept C149923435 @default.

• next