FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3149585243> ?p ?o ?g. }

• W3149585243 endingPage "e11137" @default.
• W3149585243 startingPage "e11137" @default.
• W3149585243 abstract "Jumonji C (JmjC) proteins exert critical roles in plant development and stress response through the removal of lysine methylation from histones. Brassica napus, which originated from spontaneous hybridization by Brassica rapa and Brassica oleracea, is the most important oilseed crop after soybean. In JmjC proteins of Brassica species, the structure and function and its relationship with the parents and model plant Arabidopsis thaliana remain uncharacterized. Systematic identification and analysis for JmjC family in Brassica crops can facilitate the future functional characterization and oilseed crops improvement.Basing on the conserved JmjC domain, JmjC homologs from the three Brassica species, B. rapa (AA), B. oleracea (CC) and B. napus, were identified from the Brassica database. Some methods, such as phylogenic analysis, chromosomal mapping, HMMER searching, gene structure display and Logos analysis, were used to characterize relationships of the JmjC homologs. Synonymous and nonsynonymous nucleotide substitutions were used to infer the information of gene duplication among homologs. Then, the expression levels of BnKDM5 subfamily genes were checked under abiotic stress by qRT-PCR.Sixty-five JmjC genes were identified from B. napus genome, 29 from B. rapa, and 23 from B. oleracea. These genes were grouped into seven clades based on the phylogenetic analysis, and their catalytic activities of demethylation were predicted. The average retention rate of B. napus JmjC genes (B. napus JmjC gene from B. rapa (93.1%) and B. oleracea (82.6%)) exceeded whole genome level. JmjC sequences demonstrated high conservation in domain origination, chromosomal location, intron/exon number and catalytic sites. The gene duplication events were confirmed among the homologs. Many of the BrKDM5 subfamily genes showed higher expression under drought and NaCl treatments, but only a few genes were involved in high temperature stress.This study provides the first genome-wide characterization of JmjC genes in Brassica species. The BnJmjC exhibits higher conservation during the formation process of allotetraploid than the average retention rates of the whole B. napus genome. Furthermore, expression profiles of many genes indicated that BnKDM5 subfamily genes are involved in stress response to salt, drought and high temperature." @default.
• W3149585243 created "2021-04-13" @default.
• W3149585243 creator A5005039651 @default.
• W3149585243 creator A5027624175 @default.
• W3149585243 creator A5067699989 @default.
• W3149585243 creator A5071513737 @default.
• W3149585243 creator A5085875061 @default.
• W3149585243 creator A5086281317 @default.
• W3149585243 date "2021-03-31" @default.
• W3149585243 modified "2023-10-14" @default.
• W3149585243 title "Systematic analysis of JmjC gene family and stress­-response expression of KDM5 subfamily genes in <i>Brassica napus</i>" @default.
• W3149585243 cites W1507410616 @default.
• W3149585243 cites W1857141584 @default.
• W3149585243 cites W1963645516 @default.
• W3149585243 cites W1965500155 @default.
• W3149585243 cites W1966421523 @default.
• W3149585243 cites W1974964336 @default.
• W3149585243 cites W1976702683 @default.
• W3149585243 cites W1979770722 @default.
• W3149585243 cites W1979880724 @default.
• W3149585243 cites W1980844946 @default.
• W3149585243 cites W1982409009 @default.
• W3149585243 cites W1988086016 @default.
• W3149585243 cites W1991157399 @default.
• W3149585243 cites W1992538495 @default.
• W3149585243 cites W1994829204 @default.
• W3149585243 cites W1996655258 @default.
• W3149585243 cites W1998918762 @default.
• W3149585243 cites W2000972613 @default.
• W3149585243 cites W2001752098 @default.
• W3149585243 cites W2004647662 @default.
• W3149585243 cites W2006484417 @default.
• W3149585243 cites W2006880240 @default.
• W3149585243 cites W2009858080 @default.
• W3149585243 cites W2012829695 @default.
• W3149585243 cites W2013274228 @default.
• W3149585243 cites W2016269050 @default.
• W3149585243 cites W2017596496 @default.
• W3149585243 cites W2027578670 @default.
• W3149585243 cites W2030734038 @default.
• W3149585243 cites W2035515932 @default.
• W3149585243 cites W2038574100 @default.
• W3149585243 cites W2038735357 @default.
• W3149585243 cites W2041389660 @default.
• W3149585243 cites W2052708113 @default.
• W3149585243 cites W2059569140 @default.
• W3149585243 cites W2067121492 @default.
• W3149585243 cites W2072353749 @default.
• W3149585243 cites W2076695996 @default.
• W3149585243 cites W2079898330 @default.
• W3149585243 cites W2085967823 @default.
• W3149585243 cites W2088998472 @default.
• W3149585243 cites W2097842908 @default.
• W3149585243 cites W2098952156 @default.
• W3149585243 cites W2100849967 @default.
• W3149585243 cites W2101138597 @default.
• W3149585243 cites W2106882534 @default.
• W3149585243 cites W2107277218 @default.
• W3149585243 cites W2119091671 @default.
• W3149585243 cites W2120844526 @default.
• W3149585243 cites W2124605579 @default.
• W3149585243 cites W2130122400 @default.
• W3149585243 cites W2130239280 @default.
• W3149585243 cites W2133736195 @default.
• W3149585243 cites W2144114582 @default.
• W3149585243 cites W2147524392 @default.
• W3149585243 cites W2148227886 @default.
• W3149585243 cites W2152207030 @default.
• W3149585243 cites W2154382308 @default.
• W3149585243 cites W2156213441 @default.
• W3149585243 cites W2167719653 @default.
• W3149585243 cites W2170145663 @default.
• W3149585243 cites W2191069891 @default.
• W3149585243 cites W2192080449 @default.
• W3149585243 cites W2193212246 @default.
• W3149585243 cites W2342647777 @default.
• W3149585243 cites W2344730823 @default.
• W3149585243 cites W2344947238 @default.
• W3149585243 cites W2474525766 @default.
• W3149585243 cites W2609256300 @default.
• W3149585243 cites W2699738326 @default.
• W3149585243 cites W2780232998 @default.
• W3149585243 cites W2801469768 @default.
• W3149585243 cites W2810955778 @default.
• W3149585243 cites W2943177841 @default.
• W3149585243 cites W4232899532 @default.
• W3149585243 doi "https://doi.org/10.7717/peerj.11137" @default.
• W3149585243 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/8019318" @default.
• W3149585243 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33850662" @default.
• W3149585243 hasPublicationYear "2021" @default.
• W3149585243 type Work @default.
• W3149585243 sameAs 3149585243 @default.
• W3149585243 citedByCount "6" @default.
• W3149585243 countsByYear W31495852432022 @default.
• W3149585243 countsByYear W31495852432023 @default.
• W3149585243 crossrefType "journal-article" @default.
• W3149585243 hasAuthorship W3149585243A5005039651 @default.
• W3149585243 hasAuthorship W3149585243A5027624175 @default.

• next