Matches in SemOpenAlex for { <https://semopenalex.org/work/W3157491202> ?p ?o ?g. }
Showing items 1 to 95 of
95
with 100 items per page.
- W3157491202 abstract "Simulated metagenomic reads are widely used to benchmark software and workflows for metagenome interpretation. The results of metagenomic benchmarks depend on the assumptions about their underlying ecosystems. Conclusions from benchmark studies are therefore limited to the ecosystems they mimic. Ideally, simulations are therefore based on genomes, which resemble particular metagenomic communities realistically.We developed Tamock to facilitate the realistic simulation of metagenomic reads according to a metagenomic community, based on real sequence data. Benchmarks samples can be created from all genomes and taxonomic domains present in NCBI RefSeq. Tamock automatically determines taxonomic profiles from shotgun sequence data, selects reference genomes accordingly and uses them to simulate metagenomic reads. We present an example use case for Tamock by assessing assembly and binning method performance for selected microbiomes.Tamock facilitates automated simulation of habitat-specific benchmark metagenomic data based on real sequence data and is implemented as a user-friendly command-line application, providing extensive additional information along with the simulated benchmark data. Resulting benchmarks enable an assessment of computational methods, workflows, and parameters specifically for a metagenomic habitat or ecosystem of a metagenomic study.Source code, documentation and install instructions are freely available at GitHub ( https://github.com/gerners/tamock )." @default.
- W3157491202 created "2021-05-10" @default.
- W3157491202 creator A5051653794 @default.
- W3157491202 creator A5070213705 @default.
- W3157491202 creator A5079816449 @default.
- W3157491202 date "2021-05-01" @default.
- W3157491202 modified "2023-10-06" @default.
- W3157491202 title "Tamock: simulation of habitat-specific benchmark data in metagenomics" @default.
- W3157491202 cites W1584790813 @default.
- W3157491202 cites W1979724564 @default.
- W3157491202 cites W2004594378 @default.
- W3157491202 cites W2040805829 @default.
- W3157491202 cites W2055043387 @default.
- W3157491202 cites W2112364185 @default.
- W3157491202 cites W2123009189 @default.
- W3157491202 cites W2128599926 @default.
- W3157491202 cites W2149429041 @default.
- W3157491202 cites W2157539385 @default.
- W3157491202 cites W2168477171 @default.
- W3157491202 cites W2173732482 @default.
- W3157491202 cites W2175526948 @default.
- W3157491202 cites W2462493338 @default.
- W3157491202 cites W2599417231 @default.
- W3157491202 cites W2745006471 @default.
- W3157491202 cites W2773939681 @default.
- W3157491202 cites W2896960887 @default.
- W3157491202 cites W2910615673 @default.
- W3157491202 cites W2947262621 @default.
- W3157491202 cites W2951160681 @default.
- W3157491202 cites W2952204926 @default.
- W3157491202 cites W2990249310 @default.
- W3157491202 cites W2996645820 @default.
- W3157491202 doi "https://doi.org/10.1186/s12859-021-04154-z" @default.
- W3157491202 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/8088724" @default.
- W3157491202 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/33932979" @default.
- W3157491202 hasPublicationYear "2021" @default.
- W3157491202 type Work @default.
- W3157491202 sameAs 3157491202 @default.
- W3157491202 citedByCount "0" @default.
- W3157491202 crossrefType "journal-article" @default.
- W3157491202 hasAuthorship W3157491202A5051653794 @default.
- W3157491202 hasAuthorship W3157491202A5070213705 @default.
- W3157491202 hasAuthorship W3157491202A5079816449 @default.
- W3157491202 hasBestOaLocation W31574912021 @default.
- W3157491202 hasConcept C104317684 @default.
- W3157491202 hasConcept C124101348 @default.
- W3157491202 hasConcept C15151743 @default.
- W3157491202 hasConcept C177212765 @default.
- W3157491202 hasConcept C185798385 @default.
- W3157491202 hasConcept C199360897 @default.
- W3157491202 hasConcept C205649164 @default.
- W3157491202 hasConcept C2777904410 @default.
- W3157491202 hasConcept C41008148 @default.
- W3157491202 hasConcept C55493867 @default.
- W3157491202 hasConcept C56666940 @default.
- W3157491202 hasConcept C58640448 @default.
- W3157491202 hasConcept C70721500 @default.
- W3157491202 hasConcept C77088390 @default.
- W3157491202 hasConcept C86803240 @default.
- W3157491202 hasConceptScore W3157491202C104317684 @default.
- W3157491202 hasConceptScore W3157491202C124101348 @default.
- W3157491202 hasConceptScore W3157491202C15151743 @default.
- W3157491202 hasConceptScore W3157491202C177212765 @default.
- W3157491202 hasConceptScore W3157491202C185798385 @default.
- W3157491202 hasConceptScore W3157491202C199360897 @default.
- W3157491202 hasConceptScore W3157491202C205649164 @default.
- W3157491202 hasConceptScore W3157491202C2777904410 @default.
- W3157491202 hasConceptScore W3157491202C41008148 @default.
- W3157491202 hasConceptScore W3157491202C55493867 @default.
- W3157491202 hasConceptScore W3157491202C56666940 @default.
- W3157491202 hasConceptScore W3157491202C58640448 @default.
- W3157491202 hasConceptScore W3157491202C70721500 @default.
- W3157491202 hasConceptScore W3157491202C77088390 @default.
- W3157491202 hasConceptScore W3157491202C86803240 @default.
- W3157491202 hasFunder F4320326594 @default.
- W3157491202 hasLocation W31574912021 @default.
- W3157491202 hasLocation W31574912022 @default.
- W3157491202 hasLocation W31574912023 @default.
- W3157491202 hasLocation W31574912024 @default.
- W3157491202 hasOpenAccess W3157491202 @default.
- W3157491202 hasPrimaryLocation W31574912021 @default.
- W3157491202 hasRelatedWork W1530026816 @default.
- W3157491202 hasRelatedWork W2157030199 @default.
- W3157491202 hasRelatedWork W2213210715 @default.
- W3157491202 hasRelatedWork W2801905545 @default.
- W3157491202 hasRelatedWork W3004857068 @default.
- W3157491202 hasRelatedWork W4200386764 @default.
- W3157491202 hasRelatedWork W4280639175 @default.
- W3157491202 hasRelatedWork W4282983820 @default.
- W3157491202 hasRelatedWork W4362639203 @default.
- W3157491202 hasRelatedWork W596584015 @default.
- W3157491202 isParatext "false" @default.
- W3157491202 isRetracted "false" @default.
- W3157491202 magId "3157491202" @default.
- W3157491202 workType "article" @default.