Matches in SemOpenAlex for { <https://semopenalex.org/work/W3157679996> ?p ?o ?g. }
- W3157679996 abstract "Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly.As part of the Vertebrate Genomes Project (VGP) we develop mitoVGP, a fully automated pipeline for similarity-based identification of mitochondrial reads and de novo assembly of mitochondrial genomes that incorporates both long (> 10 kbp, PacBio or Nanopore) and short (100-300 bp, Illumina) reads. Our pipeline leads to successful complete mitogenome assemblies of 100 vertebrate species of the VGP. We observe that tissue type and library size selection have considerable impact on mitogenome sequencing and assembly. Comparing our assemblies to purportedly complete reference mitogenomes based on short-read sequencing, we identify errors, missing sequences, and incomplete genes in those references, particularly in repetitive regions. Our assemblies also identify novel gene region duplications. The presence of repeats and duplications in over half of the species herein assembled indicates that their occurrence is a principle of mitochondrial structure rather than an exception, shedding new light on mitochondrial genome evolution and organization.Our results indicate that even in the simple case of vertebrate mitogenomes the completeness of many currently available reference sequences can be further improved, and caution should be exercised before claiming the complete assembly of a mitogenome, particularly from short reads alone." @default.
- W3157679996 created "2021-05-10" @default.
- W3157679996 creator A5001316572 @default.
- W3157679996 creator A5007237471 @default.
- W3157679996 creator A5007342777 @default.
- W3157679996 creator A5011633217 @default.
- W3157679996 creator A5018079714 @default.
- W3157679996 creator A5023008409 @default.
- W3157679996 creator A5027816804 @default.
- W3157679996 creator A5028548956 @default.
- W3157679996 creator A5028762981 @default.
- W3157679996 creator A5029538655 @default.
- W3157679996 creator A5030669774 @default.
- W3157679996 creator A5032271285 @default.
- W3157679996 creator A5032504955 @default.
- W3157679996 creator A5035425274 @default.
- W3157679996 creator A5035821885 @default.
- W3157679996 creator A5036777285 @default.
- W3157679996 creator A5042603880 @default.
- W3157679996 creator A5044578277 @default.
- W3157679996 creator A5047614339 @default.
- W3157679996 creator A5049934769 @default.
- W3157679996 creator A5052377950 @default.
- W3157679996 creator A5054051260 @default.
- W3157679996 creator A5055436946 @default.
- W3157679996 creator A5058763076 @default.
- W3157679996 creator A5059423803 @default.
- W3157679996 creator A5061679388 @default.
- W3157679996 creator A5063472700 @default.
- W3157679996 creator A5066372539 @default.
- W3157679996 creator A5068657716 @default.
- W3157679996 creator A5069376702 @default.
- W3157679996 creator A5073359077 @default.
- W3157679996 creator A5077157345 @default.
- W3157679996 creator A5077909607 @default.
- W3157679996 creator A5079601477 @default.
- W3157679996 creator A5082040351 @default.
- W3157679996 creator A5083679542 @default.
- W3157679996 creator A5084520604 @default.
- W3157679996 creator A5086869042 @default.
- W3157679996 creator A5086962911 @default.
- W3157679996 creator A5087747590 @default.
- W3157679996 date "2021-04-29" @default.
- W3157679996 modified "2023-10-13" @default.
- W3157679996 title "Complete vertebrate mitogenomes reveal widespread repeats and gene duplications" @default.
- W3157679996 cites W1971584645 @default.
- W3157679996 cites W1974877624 @default.
- W3157679996 cites W1974975570 @default.
- W3157679996 cites W1986820028 @default.
- W3157679996 cites W1989083100 @default.
- W3157679996 cites W1992380787 @default.
- W3157679996 cites W2002532903 @default.
- W3157679996 cites W2009991130 @default.
- W3157679996 cites W2021341670 @default.
- W3157679996 cites W2025617863 @default.
- W3157679996 cites W2040441669 @default.
- W3157679996 cites W2040452926 @default.
- W3157679996 cites W2052850516 @default.
- W3157679996 cites W2055043387 @default.
- W3157679996 cites W2059326564 @default.
- W3157679996 cites W2059891246 @default.
- W3157679996 cites W2074038593 @default.
- W3157679996 cites W2098013269 @default.
- W3157679996 cites W2099901798 @default.
- W3157679996 cites W2102619694 @default.
- W3157679996 cites W2106798733 @default.
- W3157679996 cites W2111456242 @default.
- W3157679996 cites W2119837484 @default.
- W3157679996 cites W2137756176 @default.
- W3157679996 cites W2138867529 @default.
- W3157679996 cites W2140803428 @default.
- W3157679996 cites W2152882637 @default.
- W3157679996 cites W2157233923 @default.
- W3157679996 cites W2164026209 @default.
- W3157679996 cites W2166432938 @default.
- W3157679996 cites W2170551349 @default.
- W3157679996 cites W2176429667 @default.
- W3157679996 cites W2179193067 @default.
- W3157679996 cites W2202810729 @default.
- W3157679996 cites W2388525899 @default.
- W3157679996 cites W2414443063 @default.
- W3157679996 cites W2507252565 @default.
- W3157679996 cites W2514562153 @default.
- W3157679996 cites W2515566506 @default.
- W3157679996 cites W2516283827 @default.
- W3157679996 cites W2538143681 @default.
- W3157679996 cites W2538277976 @default.
- W3157679996 cites W2569532489 @default.
- W3157679996 cites W2575430673 @default.
- W3157679996 cites W2604308930 @default.
- W3157679996 cites W2727370449 @default.
- W3157679996 cites W2734625957 @default.
- W3157679996 cites W2735702071 @default.
- W3157679996 cites W2752767432 @default.
- W3157679996 cites W2784788330 @default.
- W3157679996 cites W2789843538 @default.
- W3157679996 cites W2804937134 @default.
- W3157679996 cites W2805094274 @default.
- W3157679996 cites W2811339175 @default.
- W3157679996 cites W2927961455 @default.